SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs725510 chr1:53526247 PODN [-1607bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 9 (-) >0.05
rs2185292 chr1:53624489 SLC1A7 [+16200bp] C - 13 C vs. G 0.167 (G) 0.308 (G) >1 (-) 0 (-) >0.05
rs114508051 chr1:53527069 PODN [-785bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs11587058 chr1:53580839 SLC1A7 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs116400784 chr1:53527033 PODN [-821bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs72905175 chr1:53536261 PODN C - 13 T vs. C 0.033 (T) 0.108 (T) <1 (-) 23 (-) >0.05
rs7521090 chr1:53509793 SCP2 C - 13 T vs. C 0.092 (T) - <1 (-) 0 (-) >0.05
rs17107792 chr1:53530023 PODN C - 13 A vs. G 0.033 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs12061212 chr1:53531693 PODN C - 13 C vs. G 0.033 (C) - <1 (-) 0 (-) >0.05
rs12081696 chr1:53531698 PODN C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs41294748 chr1:53536920 PODN C - 13 A vs. G 0.033 (A) 0.108 (A) <1 (-) 23 (-) >0.05
rs76991838 chr1:53523368 PODN [-4486bp] C - 12 A vs. T - - <1 (-) 0 (-) >0.05
rs79344942 chr1:53522735 PODN [-5119bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs57718860 chr1:53521638 SCP2 [+4263bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28850943 chr1:53603072 SLC1A7 C - 13 A vs. G 0.283 (G) 0.283 (G) <1 (-) 29 (-) >0.05
rs78343210 chr1:53532881 PODN C - 13 T vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs12059934 chr1:53525162 PODN [-2692bp] C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 3 (-) >0.05
rs3766792 chr1:53590423 SLC1A7 C - 13 T vs. C 0.1 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs79891639 chr1:53517863 SCP2 [+488bp] C - 13 A vs. C - 0.083 (A) >1 (-) 2 (-) >0.05
rs4926947 chr1:53523698 PODN [-4156bp] C - 13 C vs. G 0.025 (C) - >1 (-) 0 (-) >0.05
rs17108014 chr1:53578890 SLC1A7 C - 12 A vs. G - 0.308 (A) >1 (-) 0 (-) >0.05
rs1383598 chr1:53528528 PODN C - 13 C vs. G 0.092 (C) 0.392 (C) >1 (-) 12 (-) >0.05
rs146640356 chr1:53605885 SLC1A7 C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs17107806 chr1:53532535 PODN C - 13 C vs. G 0.033 (C) 0.1 (C) >1 (-) 3 (-) >0.05
rs10437067 chr1:53530945 PODN C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs3753596 chr1:53589671 SLC1A7 C - 13 T vs. C 0.083 (T) 0.158 (T) >1 (-) 0 (-) >0.05
rs3753597 chr1:53589674 SLC1A7 C - 13 T vs. C 0.083 (T) 0.158 (T) >1 (-) 0 (-) >0.05
rs11577925 chr1:53542606 PODN C - 10 A vs. G - - <1 (-) 24 (-) >0.05
rs2275452 chr1:53535860 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs12565708 chr1:53528929 PODN C - 13 T vs. C 0.092 (T) 0.383 (T) >1 (-) 19 (-) >0.05
rs2275451 chr1:53535859 PODN C - 13 T vs. C - 0.25 (C) <1 (-) 0 (-) >0.05
rs10437069 chr1:53531278 PODN C - 13 C vs. G 0.033 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs12071908 chr1:53607227 SLC1A7 C - 13 A vs. C 0.325 (C) 0.283 (C) >1 (-) 38 (-) >0.05
rs6664845 chr1:53514497 SCP2 C - 13 C vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs11206118 chr1:53616952 SLC1A7 [+8663bp] C - 13 T vs. C - - <1 (-) 23 (-) >0.05
rs11206077 chr1:53510129 SCP2 C - 13 A vs. G 0.025 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs35058173 chr1:53607560 SLC1A7 C - 13 C vs. G 0.167 (G) 0.317 (G) <1 (-) 0 (-) >0.05
rs12132835 chr1:53600889 SLC1A7 C - 13 T vs. C 0.275 (T) 0.283 (T) >1 (-) 0 (-) >0.05
rs1531701 chr1:53535222 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs11800691 chr1:53526787 PODN [-1067bp] C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 11 (-) >0.05
rs148742928 chr1:53609265 SLC1A7 [+976bp] C - 5 C vs. G - - <1 (-) 0 (-) >0.05
rs11584649 chr1:53530487 PODN C - 13 T vs. C 0.033 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs2275455 chr1:53535924 PODN C - 13 A vs. C - 0.25 (C) >1 (-) 0 (-) >0.05
rs61769589 chr1:53652967 CPT2 [-9134bp] C - 12 A vs. G - 0.017 (A) <1 (-) 47 (-) >0.05
rs2275454 chr1:53535918 PODN C - 13 A vs. C 0.033 (C) 0.25 (C) >1 (-) 0 (-) >0.05
rs11206084 chr1:53526696 PODN [-1158bp] C - 13 C vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs17107803 chr1:53530617 PODN C - 13 A vs. C 0.033 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs725509 chr1:53526104 PODN [-1750bp] C - 13 A vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs7513730 chr1:53527948 PODN C - 13 T vs. G - - >1 (-) 19 (-) >0.05
rs10437068 chr1:53531275 PODN C - 13 A vs. G 0.033 (A) 0.033 (A) >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.