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Top Results
1.
SNCA
[-19139bp]
2.
MAPT
3.
TMEM175
4.
ASH1L
5.
MCCC1
6.
STK39
[+24494bp]
7.
rs6430538
8.
BST1
9.
NUCKS1
[+4168bp]
10.
TMEM229B
11.
LRRK2
12.
GPNMB
13.
HLA-DQB1
[+30500bp]
14.
rs2414739
15.
BCKDK
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Methods
Top results (loci containing at least one meta-analysis result with P < 5.00e-08)
Polymorphism
Location (hg19)
Gene
Ethnicity
# Samples
# Studies
Allele contrast
1000G CEU
1000G CHB+JPT
Meta OR (95%CI)
I2 (95%CI)
Meta P-value
rs356182
chr4
:
90626111
SNCA
[-19139bp]
All: C
120,238
21
G vs. A
0.417 (G)
0.375 (A)
1.34 (1.30-1.38)
50 (17-70)
1.85e-82
rs17649553
chr17
:
43994648
MAPT
All: C
114,483
20
T vs. C
0.217 (T)
-
0.77 (0.75-0.80)
0 (0-37)
6.11e-49
rs34311866
chr4
:
951947
TMEM175
All: C
120,238
21
C vs. T
0.15 (C)
0.075 (C)
1.26 (1.22-1.31)
52 (21-71)
6.00e-41
rs71628662
chr1
:
155359992
ASH1L
All: C
110,323
18
T vs. C
-
-
0.52 (0.46-0.58)
0 (-)
6.86e-28
rs12637471
chr3
:
182762437
MCCC1
All: C
120,238
21
A vs. G
0.242 (A)
0.417 (G)
0.84 (0.81-0.87)
35 (0-62)
5.38e-22
rs1955337
chr2
:
169129145
STK39
[+24494bp]
All: C
120,238
21
T vs. G
0.083 (T)
0.317 (T)
1.21 (1.16-1.26)
17 (0-51)
1.67e-20
rs6430538
chr2
:
135539967
intergenic
All: C
120,238
21
T vs. C
0.408 (T)
0.025 (C)
0.88 (0.85-0.90)
0 (0-45)
3.35e-19
rs11724635
chr4
:
15737101
BST1
All: C
120,238
21
C vs. A
0.433 (C)
0.458 (A)
0.89 (0.87-0.91)
8 (0-42)
4.26e-17
rs823118
chr1
:
205723572
NUCKS1
[+4168bp]
All: C
120,238
21
C vs. T
0.45 (C)
0.417 (T)
0.89 (0.87-0.92)
41 (0-65)
1.96e-16
rs1555399
chr14
:
67984370
TMEM229B
All: C
108,990
15
T vs. A
0.475 (T)
0.45 (T)
1.15 (1.11-1.19)
97 (96-98)
5.70e-16
rs76904798
chr12
:
40614434
LRRK2
All: C
120,238
21
T vs. C
0.158 (T)
-
1.16 (1.11-1.20)
0 (0-47)
4.86e-14
rs199347
chr7
:
23293746
GPNMB
All: C
120,238
21
G vs. A
0.392 (G)
0.325 (G)
0.90 (0.87-0.92)
11 (0-46)
5.62e-14
rs9275326
chr6
:
32666660
HLA-DQB1
[+30500bp]
All: C
99,286
13
T vs. C
0.175 (T)
0.083 (T)
0.80 (0.75-0.85)
2 (0-58)
5.81e-13
rs2414739
chr15
:
61994134
intergenic
All: C
120,238
21
G vs. A
0.283 (G)
0.183 (G)
0.90 (0.87-0.92)
19 (0-52)
3.59e-12
rs14235
chr16
:
31121793
BCKDK
All: C
120,238
21
A vs. G
0.45 (A)
0.092 (G)
1.10 (1.07-1.14)
31 (0-59)
3.63e-12
rs329648
chr11
:
133765367
MIR4697
[-3032bp]
All: C
120,238
21
T vs. C
0.333 (T)
0.267 (T)
1.11 (1.07-1.14)
0 (0-47)
8.05e-12
rs117896735
chr10
:
121536327
INPP5F
All: C
104,595
13
A vs. G
0.017 (A)
-
1.77 (1.50-2.08)
15 (0-54)
1.21e-11
rs6812193
chr4
:
77198986
FAM47E
All: C
120,238
21
T vs. C
0.392 (T)
0.092 (T)
0.91 (0.88-0.93)
36 (0-62)
1.85e-11
rs12456492
chr18
:
40673380
RIT2
All: C
120,238
21
G vs. A
0.375 (G)
0.4 (G)
1.10 (1.07-1.14)
17 (0-51)
2.15e-11
rs11060180
chr12
:
123303586
CCDC62
All: C
105,818
17
G vs. A
0.483 (G)
0.208 (G)
0.91 (0.88-0.93)
21 (0-56)
3.08e-11
rs7155501
chr14
:
55347827
GCH1
All: C
108,990
15
A vs. G
-
-
1.12 (1.08-1.15)
9 (0-46)
1.25e-10
rs10797576
chr1
:
232664611
SIPA1L2
All: C
120,238
21
T vs. C
0.092 (T)
0.092 (T)
1.13 (1.09-1.18)
0 (0-41)
1.76e-10
rs55785911
chr20
:
3153503
UBOX5
[+12661bp]
All: C
120,238
21
A vs. G
0.417 (A)
0.392 (G)
0.91 (0.88-0.94)
29 (0-58)
3.30e-10
rs62120679
chr19
:
2363319
TMPRSS9
[-26450bp]
All: C
99,286
13
T vs. C
0.292 (T)
0.3 (C)
1.14 (1.09-1.19)
47 (0-72)
2.52e-09
rs3793947
chr11
:
83544472
DLG2
All: C
108,990
15
A vs. G
0.375 (A)
0.442 (A)
0.91 (0.88-0.94)
0 (0-19)
2.59e-08
rs591323
chr8
:
16697091
intergenic
All: C
120,238
21
A vs. G
0.325 (A)
0.383 (A)
0.91 (0.89-0.94)
0 (0-43)
3.17e-08
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