GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
rs858275 chr7:23294144 GPNMB All: C 108,990 15 C vs. T 0.375 (C) 0.325 (C) 0.89 (0.87-0.92) 13 (0-51) 5.52e-12
rs199355 chr7:23296533 GPNMB All: C 108,990 15 A vs. G 0.375 (A) 0.2 (A) 0.89 (0.87-0.92) 10 (0-48) 7.42e-12
rs858274 chr7:23294668 GPNMB All: C 108,990 15 T vs. C - - 1.12 (1.08-1.16) 11 (0-49) 7.52e-12
rs1637190 chr7:23269065 GPNMB [-6521bp] All: C 108,990 15 G vs. A 0.375 (G) 0.317 (G) 0.89 (0.87-0.92) 14 (0-52) 7.78e-12
rs1728313 chr7:23271031 GPNMB [-4555bp] All: C 108,990 15 C vs. A 0.375 (C) 0.425 (C) 0.89 (0.87-0.92) 14 (0-52) 8.20e-12
rs199348 chr7:23293098 GPNMB All: C 108,990 15 A vs. C 0.392 (A) 0.2 (A) 0.89 (0.87-0.92) 11 (0-49) 8.31e-12
rs858240 chr7:23284237 GPNMB All: C 108,990 15 G vs. A 0.392 (G) 0.275 (G) 0.89 (0.87-0.92) 13 (0-50) 8.62e-12
rs199351 chr7:23300049 GPNMB All: C 108,990 15 C vs. A 0.392 (C) 0.425 (C) 0.89 (0.87-0.92) 9 (0-46) 9.25e-12
rs858239 chr7:23286315 GPNMB All: C 108,990 15 A vs. G 0.392 (A) 0.308 (A) 0.90 (0.87-0.92) 14 (0-52) 9.60e-12
rs10262243 chr7:23290987 GPNMB All: C 108,990 15 A vs. G 0.367 (A) 0.2 (A) 0.89 (0.86-0.92) 11 (0-49) 1.10e-11
rs858272 chr7:23276785 GPNMB All: C 108,990 15 G vs. A 0.375 (G) 0.442 (G) 0.89 (0.86-0.92) 7 (0-43) 1.14e-11
rs858273 chr7:23294900 GPNMB All: C 108,990 15 C vs. T - - 1.12 (1.08-1.16) 8 (0-44) 1.18e-11
rs1728292 chr7:23263474 GPNMB [-12112bp] All: C 108,990 15 C vs. G 0.392 (C) 0.308 (C) 0.90 (0.87-0.92) 10 (0-48) 1.19e-11
rs858271 chr7:23278283 GPNMB All: C 108,990 15 T vs. G 0.367 (T) 0.283 (T) 0.90 (0.87-0.92) 14 (0-52) 1.20e-11
rs199357 chr7:23288309 GPNMB All: C 108,990 15 A vs. G 0.392 (A) 0.217 (A) 0.90 (0.87-0.92) 11 (0-49) 1.24e-11
rs10085838 chr7:23298415 GPNMB All: C 108,990 15 A vs. C 0.367 (A) 0.167 (A) 0.89 (0.86-0.92) 8 (0-44) 1.32e-11
rs6461703 chr7:23264284 GPNMB [-11302bp] All: C 108,990 15 T vs. G - - 1.12 (1.08-1.16) 10 (0-47) 1.46e-11
rs1881203 chr7:23292808 GPNMB All: C 108,990 15 C vs. T 0.367 (C) 0.2 (C) 0.89 (0.87-0.92) 11 (0-49) 1.47e-11
rs1624451 chr7:23262435 GPNMB [-13151bp] All: C 108,990 15 A vs. T 0.375 (A) 0.283 (A) 0.89 (0.87-0.92) 14 (0-52) 1.72e-11
rs1637193 chr7:23260251 GPNMB [-15335bp] All: C 106,157 14 T vs. G 0.383 (T) 0.392 (T) 0.89 (0.86-0.92) 0 (0-53) 2.18e-11
rs1637192 chr7:23260514 GPNMB [-15072bp] All: C 108,990 15 A vs. G 0.383 (A) 0.283 (A) 0.90 (0.87-0.93) 0 (0-51) 2.26e-11
rs1637221 chr7:23232659 NUPL2 All: C 108,990 15 T vs. C - - 1.13 (1.09-1.17) 11 (0-48) 2.40e-11
rs28458177 chr7:23294872 GPNMB All: C 108,990 15 A vs. G 0.367 (A) 0.15 (A) 0.89 (0.86-0.92) 10 (0-47) 2.59e-11
rs858289 chr7:23248158 NUPL2 [+7528bp] All: C 108,990 15 T vs. C 0.392 (T) 0.3 (T) 0.89 (0.86-0.92) 11 (0-49) 2.72e-11
rs10268610 chr7:23274764 GPNMB [-822bp] All: C 108,990 15 G vs. A 0.342 (G) 0.317 (G) 0.89 (0.87-0.92) 10 (0-48) 2.94e-11
rs156429 chr7:23306020 GPNMB All: C 108,990 15 C vs. T 0.383 (C) 0.3 (C) 0.89 (0.87-0.92) 0 (0-46) 3.09e-11
rs13225593 chr7:23260307 GPNMB [-15279bp] All: C 108,990 15 G vs. A 0.342 (G) 0.292 (G) 0.90 (0.87-0.93) 0 (0-52) 3.30e-11
rs10250602 chr7:23303701 GPNMB All: C 108,990 15 C vs. T 0.358 (C) 0.15 (C) 0.89 (0.86-0.92) 7 (0-57) 3.87e-11
rs858290 chr7:23248036 NUPL2 [+7406bp] All: C 108,990 15 G vs. A 0.392 (G) 0.3 (G) 0.89 (0.87-0.92) 14 (0-52) 4.10e-11
rs10227559 chr7:23272144 GPNMB [-3442bp] All: C 108,990 15 A vs. G 0.317 (A) - 0.90 (0.87-0.93) 16 (0-54) 4.14e-11
rs858305 chr7:23242830 NUPL2 [+2200bp] All: C 108,990 15 G vs. C 0.392 (G) 0.292 (G) 0.89 (0.87-0.93) 15 (0-53) 5.59e-11
rs858295 chr7:23245569 NUPL2 [+4939bp] All: C 108,990 15 G vs. A 0.4 (G) 0.3 (G) 0.90 (0.87-0.93) 14 (0-52) 5.62e-11
rs59832199 chr7:23263786 GPNMB [-11800bp] All: C 108,990 15 T vs. C - - 1.14 (1.10-1.19) 24 (0-59) 5.68e-11
rs858300 chr7:23244631 NUPL2 [+4001bp] All: C 108,990 15 G vs. A 0.367 (G) 0.3 (G) 0.90 (0.87-0.93) 14 (0-52) 5.96e-11
rs156425 chr7:23309119 GPNMB All: C 108,990 15 C vs. T 0.392 (C) 0.417 (C) 0.90 (0.87-0.93) 0 (0-42) 6.13e-11
rs858306 chr7:23242754 NUPL2 [+2124bp] All: C 108,990 15 T vs. A 0.392 (T) 0.3 (T) 0.90 (0.87-0.93) 14 (0-52) 6.21e-11
rs6461702 chr7:23249273 NUPL2 [+8643bp] All: C 108,990 15 G vs. C 0.358 (G) 0.283 (G) 0.89 (0.86-0.92) 17 (0-54) 9.86e-11
rs858279 chr7:23251005 NUPL2 [+10375bp] All: C 108,990 15 C vs. T 0.392 (C) 0.317 (C) 0.89 (0.86-0.92) 6 (0-56) 1.03e-10
rs6970694 chr7:23250828 NUPL2 [+10198bp] All: C 108,990 15 C vs. T 0.367 (C) 0.283 (C) 0.89 (0.86-0.93) 17 (0-54) 1.08e-10
rs28673077 chr7:23250854 NUPL2 [+10224bp] All: C 108,990 15 T vs. C 0.358 (T) 0.283 (T) 0.89 (0.86-0.93) 16 (0-54) 1.09e-10
rs6942981 chr7:23231548 NUPL2 All: C 108,990 15 T vs. C 0.375 (T) 0.283 (T) 0.89 (0.86-0.93) 20 (0-56) 1.13e-10
rs6969563 chr7:23233219 NUPL2 All: C 108,990 15 T vs. A - - 1.12 (1.08-1.16) 19 (0-56) 1.14e-10
rs1618339 chr7:23229774 NUPL2 All: C 108,990 15 C vs. T 0.408 (C) 0.383 (C) 0.90 (0.87-0.93) 11 (0-49) 1.17e-10
rs166663 chr7:23316742 GPNMB [+2015bp] All: C 108,990 15 C vs. A 0.392 (C) 0.292 (C) 0.90 (0.87-0.93) 0 (0-41) 1.69e-10
rs1728320 chr7:23319789 GPNMB [+5062bp] All: C 108,990 15 G vs. T 0.375 (G) 0.392 (G) 0.90 (0.87-0.93) 0 (0-40) 1.77e-10
rs6968810 chr7:23241791 NUPL2 [+1161bp] All: C 108,990 15 G vs. C - - 1.12 (1.08-1.16) 19 (0-56) 1.77e-10
rs6943926 chr7:23231982 NUPL2 All: C 108,990 15 G vs. T - - 1.12 (1.08-1.16) 17 (0-54) 1.86e-10
rs10279691 chr7:23228387 NUPL2 All: C 108,990 15 G vs. A 0.375 (G) 0.283 (G) 0.90 (0.87-0.93) 17 (0-54) 1.91e-10
rs28635122 chr7:23310181 GPNMB All: C 108,990 15 T vs. C 0.367 (T) 0.167 (T) 0.90 (0.87-0.93) 0 (0-50) 1.93e-10

Association studies for this region [+]