SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
rs1242318 chr1:53414089 SCP2 C - 12 A vs. G - - >1 (-) 7 (-) <0.05
rs1242327 chr1:53399073 SCP2 C - 12 A vs. G 0.108 (A) 0.008 (A) >1 (-) 5 (-) <0.05
rs537822 chr1:53342954 ZYG11A C - 13 T vs. C 0.108 (C) 0.175 (C) <1 (-) 0 (-) <0.05
rs34107528 chr1:53537396 PODN C - 13 A vs. G 0.033 (A) - >1 (-) 7 (-) <0.05
rs35994602 chr1:53521242 SCP2 [+3867bp] C - 12 A vs. G 0.05 (A) - >1 (-) 1 (-) <0.05
rs35078877 chr1:53469661 SCP2 C - 11 T vs. C 0.15 (T) - >1 (-) 8 (-) <0.05
rs10273305 chr1:53471251 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs148434605 chr1:53524883 PODN [-2971bp] C - 3 T vs. C - - <1 (-) 58 (-) <0.05
rs59332038 chr1:53565003 SLC1A7 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs115591365 chr1:53466483 SCP2 C - 10 T vs. C 0.008 (T) - >1 (-) 0 (-) <0.05
rs145249699 chr1:53532323 PODN C - 7 A vs. G - - >1 (-) 0 (-) <0.05
rs80171040 chr1:53489086 SCP2 C - 10 A vs. G 0.017 (G) - <1 (-) 0 (-) <0.05
rs6687326 chr1:53438773 SCP2 C - 7 A vs. G - - >1 (-) 0 (-) <0.05
rs116429142 chr1:53405481 SCP2 C - 3 A vs. G 0.042 (G) - <1 (-) 0 (-) <0.05
rs12031385 chr1:53559503 SLC1A7 C - 12 A vs. G 0.058 (A) 0.225 (A) <1 (-) 23 (-) <0.05
rs11206087 chr1:53544289 PODN C - 13 T vs. C 0.05 (T) 0.183 (T) <1 (-) 15 (-) <0.05
rs78829384 chr1:53352035 ZYG11A C - 5 T vs. C - - <1 (-) 30 (-) <0.05
rs11803838 chr1:53545071 PODN C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs12517748 chr1:53470730 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs12723536 chr1:53546070 PODN C - 13 A vs. G 0.217 (G) - <1 (-) 0 (-) >0.05
rs17107877 chr1:53547371 PODN C - 13 A vs. G 0.217 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs12045217 chr1:53559247 SLC1A7 C - 13 T vs. C 0.05 (T) 0.192 (T) <1 (-) 18 (-) >0.05
rs12129653 chr1:53558366 SLC1A7 C - 13 T vs. C 0.058 (C) 0.225 (C) >1 (-) 19 (-) >0.05
rs3816744 chr1:53554680 SLC1A7 C - 13 T vs. C 0.058 (C) 0.225 (C) >1 (-) 20 (-) >0.05
rs11206090 chr1:53548958 PODN C - 13 A vs. G 0.217 (A) - >1 (-) 0 (-) >0.05
rs116779030 chr1:53344103 ZYG11A C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs116627249 chr1:53567007 SLC1A7 C - 13 A vs. T 0.25 (A) 0.108 (A) >1 (-) 0 (-) >0.05
rs1001513 chr1:53548957 PODN C - 13 T vs. C 0.058 (T) 0.192 (T) <1 (-) 16 (-) >0.05
rs76822490 chr1:53344826 ZYG11A C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs11206088 chr1:53544578 PODN C - 13 T vs. C 0.217 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs112013548 chr1:53345847 ZYG11A C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs12745973 chr1:53543312 PODN C - 13 T vs. C 0.217 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs11206089 chr1:53545533 PODN C - 13 T vs. C 0.217 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs150175951 chr1:53351644 ZYG11A C - 7 T vs. G - - >1 (-) 0 (-) >0.05
rs114829887 chr1:53557528 SLC1A7 C - 10 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs34917668 chr1:53470866 SCP2 C - 5 T vs. C - - <1 (-) 44 (-) >0.05
rs67524061 chr1:53566351 SLC1A7 C - 13 T vs. C 0.258 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs61768112 chr1:53566341 SLC1A7 C - 13 T vs. C 0.258 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs28545024 chr1:53566635 SLC1A7 C - 13 A vs. G 0.25 (G) 0.242 (G) <1 (-) 0 (-) >0.05
rs28451553 chr1:53566571 SLC1A7 C - 13 A vs. G 0.25 (G) 0.242 (G) <1 (-) 0 (-) >0.05
rs11804391 chr1:53548606 PODN C - 13 A vs. G 0.217 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs61770798 chr1:53565946 SLC1A7 C - 13 T vs. C 0.25 (C) 0.233 (C) <1 (-) 0 (-) >0.05
rs10465823 chr1:53564637 SLC1A7 C - 13 A vs. G 0.242 (G) 0.242 (G) <1 (-) 0 (-) >0.05
rs2282339 chr1:53550543 PODN C - 13 A vs. G 0.058 (G) 0.183 (G) >1 (-) 15 (-) >0.05
rs10465824 chr1:53564656 SLC1A7 C - 13 A vs. G 0.242 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs1001512 chr1:53549039 PODN C - 13 A vs. G 0.058 (A) 0.183 (A) <1 (-) 14 (-) >0.05
rs1001511 chr1:53549041 PODN C - 13 A vs. G 0.058 (A) 0.183 (A) <1 (-) 14 (-) >0.05
rs10465822 chr1:53564605 SLC1A7 C - 13 T vs. C 0.25 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs12028726 chr1:53551703 PODN [+529bp] C - 13 A vs. G 0.058 (A) 0.192 (A) <1 (-) 21 (-) >0.05

Association studies for this region [+]