SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11206072 chr1:53484234 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs72903200 chr1:53506814 SCP2 C - 13 A vs. G - - >1 (-) 13 (-) >0.05
rs10788947 chr1:53513168 SCP2 C - 13 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs74550275 chr1:53514385 SCP2 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs6657017 chr1:53459461 SCP2 C - 13 A vs. G 0.067 (A) 0.35 (A) >1 (-) 0 (-) >0.05
rs17107812 chr1:53532920 PODN C - 13 A vs. C 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs78096409 chr1:53536236 PODN C - 13 T vs. C - 0.233 (C) <1 (-) 0 (-) >0.05
rs146285200 chr1:53344529 ZYG11A C - 12 T vs. C - - <1 (-) 15 (-) >0.05
rs76248987 chr1:53532984 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs78175275 chr1:53535055 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs4926944 chr1:53490068 SCP2 C - 13 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs1531698 chr1:53535085 PODN C - 13 T vs. C 0.033 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs145695927 chr1:53439083 SCP2 C - 7 A vs. G - - >1 (-) 17 (-) >0.05
rs1531700 chr1:53535205 PODN C - 13 T vs. C 0.033 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs1531702 chr1:53535269 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs1531703 chr1:53535443 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs4926950 chr1:53534588 PODN C - 13 T vs. C 0.033 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs72903119 chr1:53490746 SCP2 C - 13 A vs. T 0.033 (T) 0.083 (T) <1 (-) 9 (-) >0.05
rs74980183 chr1:53465364 SCP2 C - 9 T vs. G 0.067 (G) - >1 (-) 22 (-) >0.05
rs56054926 chr1:53527996 PODN C - 13 A vs. G - 0.383 (G) <1 (-) 20 (-) >0.05
rs10493170 chr1:53460091 SCP2 C - 13 T vs. C 0.033 (T) 0.267 (T) >1 (-) 0 (-) >0.05
rs116111940 chr1:53459591 SCP2 C - 13 A vs. G 0.033 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs3766767 chr1:53560301 SLC1A7 C - 13 T vs. C 0.242 (T) 0.467 (T) >1 (-) 0 (-) >0.05
rs74082410 chr1:53528955 PODN C - 13 A vs. G 0.025 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs2306459 chr1:53554305 SLC1A7 C - 13 A vs. G 0.033 (A) 0.425 (A) <1 (-) 0 (-) >0.05
rs61181386 chr1:53527132 PODN [-722bp] C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs4926948 chr1:53533333 PODN C - 13 A vs. G 0.067 (G) 0.117 (G) >1 (-) 15 (-) >0.05
rs11588200 chr1:53512519 SCP2 C - 13 T vs. G 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs10888762 chr1:53519218 SCP2 [+1843bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 0 (-) >0.05
rs76845575 chr1:53467807 SCP2 C - 13 T vs. C - - >1 (-) 13 (-) >0.05
rs79906090 chr1:53396076 SCP2 C - 13 T vs. C - 0.217 (T) >1 (-) 0 (-) >0.05
rs11206079 chr1:53513423 SCP2 C - 13 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs4348672 chr1:53513837 SCP2 C - 13 C vs. G 0.017 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs4599997 chr1:53513768 SCP2 C - 13 C vs. G 0.017 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs61671409 chr1:53396324 SCP2 C - 13 A vs. G 0.025 (A) 0.225 (A) >1 (-) 0 (-) >0.05
rs6664654 chr1:53514350 SCP2 C - 13 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs2896792 chr1:53513982 SCP2 C - 13 T vs. C - 0.033 (T) >1 (-) 0 (-) >0.05
rs61199247 chr1:53396558 SCP2 C - 13 T vs. C 0.025 (C) 0.217 (C) <1 (-) 0 (-) >0.05
rs11206081 chr1:53514066 SCP2 C - 13 C vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs6670262 chr1:53451922 SCP2 C - 13 T vs. C 0.058 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs6694402 chr1:53473973 SCP2 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs17107541 chr1:53462338 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 14 (-) >0.05
rs17107484 chr1:53410388 SCP2 C - 13 A vs. G 0.025 (A) 0.2 (A) >1 (-) 0 (-) >0.05
rs60537900 chr1:53519464 SCP2 [+2089bp] C - 13 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs60905879 chr1:53519646 SCP2 [+2271bp] C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs58313958 chr1:53519716 SCP2 [+2341bp] C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs148677376 chr1:53467653 SCP2 C - 13 A vs. G - - >1 (-) 14 (-) >0.05
rs78696216 chr1:53455292 SCP2 C - 13 T vs. G 0.033 (G) 0.233 (G) <1 (-) 0 (-) >0.05
rs61312635 chr1:53526879 PODN [-975bp] C - 13 T vs. C 0.067 (C) 0.35 (C) <1 (-) 0 (-) >0.05
rs79637461 chr1:53469867 SCP2 C - 4 A vs. G - - <1 (-) 0 (-) >0.05

Association studies for this region [+]