SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs61398052 chr1:53494514 SCP2 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs61441285 chr1:53494516 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs10399937 chr1:53483431 SCP2 C - 13 T vs. C 0.083 (C) 0.392 (C) <1 (-) 0 (-) >0.05
rs6686866 chr1:53486378 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs12566048 chr1:53470757 SCP2 C - 13 T vs. C 0.033 (T) 0.242 (T) <1 (-) 0 (-) >0.05
rs17107693 chr1:53501456 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs6681542 chr1:53479892 SCP2 C - 13 T vs. C 0.033 (C) 0.083 (C) <1 (-) 11 (-) >0.05
rs72901347 chr1:53461789 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs12562217 chr1:53470510 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs17838020 chr1:53500798 SCP2 C - 12 A vs. T - - <1 (-) 0 (-) >0.05
rs72903182 chr1:53502660 SCP2 C - 13 A vs. G - - <1 (-) 12 (-) >0.05
rs7550236 chr1:53520126 SCP2 [+2751bp] C - 13 T vs. C 0.092 (C) 0.4 (C) <1 (-) 4 (-) >0.05
rs72905134 chr1:53518658 SCP2 [+1283bp] C - 13 A vs. G 0.075 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs12569270 chr1:53519795 SCP2 [+2420bp] C - 13 T vs. C 0.092 (C) 0.4 (C) <1 (-) 11 (-) >0.05
rs7512539 chr1:53489448 SCP2 C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs72905166 chr1:53531298 PODN C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs74984772 chr1:53477558 SCP2 C - 13 T vs. G 0.033 (G) 0.083 (G) <1 (-) 11 (-) >0.05
rs112105320 chr1:53501677 SCP2 C - 13 A vs. G - - >1 (-) 13 (-) >0.05
rs4926941 chr1:53457969 SCP2 C - 13 T vs. C 0.083 (C) - >1 (-) 0 (-) >0.05
rs111849363 chr1:53495647 SCP2 C - 13 A vs. G - - <1 (-) 7 (-) >0.05
rs2275456 chr1:53536025 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs17107579 chr1:53482662 SCP2 C - 13 A vs. C 0.033 (C) 0.083 (C) <1 (-) 9 (-) >0.05
rs17107843 chr1:53538231 PODN C - 13 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs78344136 chr1:53536231 PODN C - 13 A vs. G - 0.25 (G) <1 (-) 0 (-) >0.05
rs143565785 chr1:53426200 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs10493172 chr1:53523904 PODN [-3950bp] C - 13 A vs. G 0.033 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs17107681 chr1:53498221 SCP2 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs59611754 chr1:53536335 PODN C - 13 A vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs116005653 chr1:53555954 SLC1A7 C - 9 T vs. C 0.017 (T) - <1 (-) 37 (-) >0.05
rs59750828 chr1:53510126 SCP2 C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs59926965 chr1:53536315 PODN C - 13 A vs. G - 0.25 (G) <1 (-) 0 (-) >0.05
rs75794829 chr1:53423372 SCP2 C - 13 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
chr1:53378967 chr1:53378967 ECHDC2 C - 4 A vs. G - - <1 (-) 60 (-) >0.05
rs10788948 chr1:53521486 SCP2 [+4111bp] C - 13 C vs. G 0.092 (C) 0.392 (C) >1 (-) 2 (-) >0.05
rs17107836 chr1:53536452 PODN C - 13 A vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs58844750 chr1:53468793 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs6662474 chr1:53499784 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs138054379 chr1:53446903 SCP2 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs11206083 chr1:53522317 SCP2 [+4942bp] C - 13 A vs. G - - <1 (-) 2 (-) >0.05
rs144341764 chr1:53363700 ECHDC2 C - 12 A vs. G - - >1 (-) 16 (-) >0.05
rs12076197 chr1:53409573 SCP2 C - 7 C vs. G - - >1 (-) 28 (-) >0.05
rs11206057 chr1:53448794 SCP2 C - 13 A vs. G 0.033 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs61005361 chr1:53500513 SCP2 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs7529260 chr1:53510822 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 12 (-) >0.05
rs148362086 chr1:53496351 SCP2 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs17107724 chr1:53507145 SCP2 C - 13 T vs. C 0.033 (C) 0.092 (C) <1 (-) 13 (-) >0.05
rs145912198 chr1:53425637 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs17107713 chr1:53503239 SCP2 C - 11 T vs. G - - <1 (-) 0 (-) >0.05
rs6689450 chr1:53492637 SCP2 C - 13 A vs. T - 0.383 (A) >1 (-) 3 (-) >0.05
rs4435816 chr1:53471072 SCP2 C - 13 T vs. C - - >1 (-) 15 (-) >0.05

Association studies for this region [+]