SCCPDH, chr1:246887349-246931439 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3007316 chr1:246873394 SCCPDH [-13955bp] All: C 108,990 15 T vs. C 0.358 (T) 0.267 (T) 1.07 (1.04-1.11) 0 (0-43) 4.87e-05
Meta_image?name=rs3007316

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3007316 chr1:246873394 SCCPDH [-13955bp] All: C 108,990 15 T vs. C 0.358 (T) 0.267 (T) 1.07 (1.04-1.11) 0 (0-43) 4.87e-05
rs12045922 chr1:246844066 CNST [+12180bp] C - 13 T vs. C 0.317 (T) 0.167 (T) <1 (-) 0 (-) <0.05
rs61855376 chr1:246876818 SCCPDH [-10531bp] C - 10 T vs. G - - <1 (-) 0 (-) <0.05
rs72764608 chr1:246846184 CNST [+14298bp] C - 13 T vs. C 0.292 (T) 0.117 (T) <1 (-) 22 (-) <0.05
rs55823910 chr1:246846781 CNST [+14895bp] C - 13 C vs. G 0.258 (G) 0.125 (G) >1 (-) 22 (-) <0.05
rs7532453 chr1:246847998 CNST [+16112bp] C - 13 A vs. G 0.258 (A) 0.108 (A) <1 (-) 20 (-) <0.05
rs3007317 chr1:246875832 SCCPDH [-11517bp] All: C 108,990 15 T vs. G - - 0.94 (0.91-0.97) 0 (0-46) 4.80e-04
rs9426265 chr1:246879122 SCCPDH [-8227bp] C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs7417077 chr1:246876840 SCCPDH [-10509bp] C - 13 T vs. C - - >1 (-) 0 (-) <0.05
rs56331796 chr1:246848889 CNST [+17003bp] C - 13 A vs. C 0.225 (C) 0.133 (C) >1 (-) 23 (-) <0.05
rs142963823 chr1:246907723 SCCPDH C - 11 T vs. C - - <1 (-) 30 (-) <0.05
rs4926459 chr1:246947793 SCCPDH [+16354bp] C - 13 T vs. C 0.392 (T) 0.267 (T) >1 (-) 0 (-) <0.05
rs58719925 chr1:246841316 CNST [+9430bp] C - 13 T vs. C 0.208 (C) 0.175 (C) >1 (-) 0 (-) <0.05
rs10754532 chr1:246888053 SCCPDH C - 13 A vs. G 0.417 (G) 0.267 (G) <1 (-) 0 (-) <0.05
rs12142760 chr1:246950231 SCCPDH [+18792bp] C - 13 A vs. G 0.375 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs7416239 chr1:246885581 SCCPDH [-1768bp] C - 13 A vs. G 0.383 (A) 0.25 (A) >1 (-) 0 (-) <0.05
rs6426326 chr1:246885235 SCCPDH [-2114bp] C - 13 A vs. T 0.408 (T) 0.267 (T) <1 (-) 0 (-) <0.05
rs115111952 chr1:246851909 CNST [+20023bp] C - 12 A vs. C 0.025 (A) - <1 (-) 32 (-) <0.05
rs12090470 chr1:246920462 SCCPDH C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs34989088 chr1:246950717 SCCPDH [+19278bp] C - 13 C vs. G - - >1 (-) 0 (-) <0.05
rs3007324 chr1:246914940 SCCPDH C - 13 A vs. T 0.367 (A) - >1 (-) 0 (-) <0.05
rs9426267 chr1:246887046 SCCPDH [-303bp] C - 13 T vs. G 0.417 (G) - <1 (-) 19 (-) <0.05
rs3007323 chr1:246911034 SCCPDH C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs4130316 chr1:246919422 SCCPDH C - 13 T vs. C 0.383 (T) 0.267 (T) >1 (-) 0 (-) <0.05
rs9426271 chr1:246913589 SCCPDH C - 13 A vs. G 0.367 (G) 0.267 (G) <1 (-) 0 (-) <0.05
rs3007411 chr1:246889540 SCCPDH C - 13 A vs. C 0.367 (C) 0.25 (C) <1 (-) 0 (-) <0.05
rs3007322 chr1:246903654 SCCPDH C - 13 C vs. G 0.367 (C) 0.258 (C) >1 (-) 0 (-) <0.05
rs4130317 chr1:246919472 SCCPDH C - 13 T vs. C 0.358 (T) 0.283 (T) >1 (-) 0 (-) <0.05
rs4926457 chr1:246946021 SCCPDH [+14582bp] C - 13 C vs. G 0.383 (C) 0.267 (C) >1 (-) 0 (-) <0.05
rs4244630 chr1:246949819 SCCPDH [+18380bp] C - 13 A vs. G 0.383 (G) 0.267 (G) <1 (-) 0 (-) <0.05
rs9700703 chr1:246882657 SCCPDH [-4692bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs10802443 chr1:246946856 SCCPDH [+15417bp] C - 13 A vs. G 0.217 (G) - <1 (-) 0 (-) <0.05
rs6685364 chr1:246939943 SCCPDH [+8504bp] C - 13 T vs. C 0.358 (C) 0.267 (C) <1 (-) 0 (-) <0.05
rs9426269 chr1:246900930 SCCPDH C - 13 T vs. C 0.375 (T) 0.267 (T) >1 (-) 0 (-) <0.05
rs12085330 chr1:246939178 SCCPDH [+7739bp] C - 13 A vs. G 0.358 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs12027222 chr1:246887124 SCCPDH [-225bp] C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs4926454 chr1:246940826 SCCPDH [+9387bp] C - 13 C vs. G 0.383 (C) 0.267 (C) >1 (-) 0 (-) <0.05
rs3795463 chr1:246940182 SCCPDH [+8743bp] C - 13 A vs. C 0.358 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs10159002 chr1:246938049 SCCPDH [+6610bp] C - 13 A vs. G 0.383 (G) 0.267 (G) <1 (-) 0 (-) <0.05
rs12144408 chr1:246929483 SCCPDH C - 13 A vs. G 0.383 (G) 0.267 (G) <1 (-) 0 (-) <0.05
rs10802442 chr1:246926389 SCCPDH C - 13 T vs. G 0.383 (T) 0.267 (T) >1 (-) 0 (-) <0.05
rs10127783 chr1:246931242 SCCPDH C - 13 T vs. C 0.383 (T) 0.267 (T) >1 (-) 0 (-) <0.05
rs6664091 chr1:246914408 SCCPDH C - 13 A vs. G 0.433 (A) 0.417 (A) >1 (-) 17 (-) <0.05
rs6664883 chr1:246939277 SCCPDH [+7838bp] C - 13 A vs. G 0.383 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs34649985 chr1:246933963 SCCPDH [+2524bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs6426328 chr1:246891260 SCCPDH C - 13 T vs. G 0.425 (T) 0.417 (T) >1 (-) 22 (-) <0.05
rs10924824 chr1:246931824 SCCPDH [+385bp] C - 13 A vs. G 0.383 (G) 0.267 (G) <1 (-) 0 (-) <0.05
rs3935011 chr1:246891269 SCCPDH C - 13 T vs. C 0.442 (C) 0.417 (C) <1 (-) 22 (-) <0.05
rs6683786 chr1:246840223 CNST [+8337bp] C - 13 A vs. G 0.2 (G) 0.3 (G) >1 (-) 24 (-) <0.05
rs9426218 chr1:246904532 SCCPDH C - 13 C vs. G 0.342 (C) 0.25 (C) >1 (-) 0 (-) <0.05

Association studies for this region [+]