LCE3A, chr1:152595310-152595579 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7529535 chr1:152605607 LCE3A [+10028bp] All: C 108,990 15 A vs. C 0.367 (A) 0.242 (A) 0.92 (0.88-0.96) 26 (0-60) 7.66e-05
Meta_image?name=rs7529535

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7529535 chr1:152605607 LCE3A [+10028bp] All: C 108,990 15 A vs. C 0.367 (A) 0.242 (A) 0.92 (0.88-0.96) 26 (0-60) 7.66e-05
rs7545817 chr1:152607331 LCE3A [+11752bp] All: C 108,990 15 G vs. T 0.383 (G) 0.25 (G) 0.92 (0.89-0.96) 34 (0-65) 1.60e-04
rs6697560 chr1:152592892 LCE3A [-2418bp] C - 13 A vs. G - 0.367 (A) <1 (-) 36 (-) <0.05
rs4845449 chr1:152591024 LCE3A [-4286bp] C - 12 A vs. T 0.433 (T) 0.367 (T) >1 (-) 41 (-) <0.05
rs10888503 chr1:152593549 LCE3A [-1761bp] C - 13 T vs. C 0.442 (C) 0.367 (C) >1 (-) 39 (-) <0.05
rs6662654 chr1:152593081 LCE3A [-2229bp] C - 13 T vs. G 0.45 (G) 0.367 (G) >1 (-) 38 (-) <0.05
rs6700181 chr1:152593087 LCE3A [-2223bp] C - 13 A vs. G 0.45 (A) 0.367 (A) <1 (-) 39 (-) <0.05
rs6700158 chr1:152592828 LCE3A [-2482bp] C - 13 T vs. G 0.442 (T) 0.367 (T) <1 (-) 39 (-) <0.05
rs4845454 chr1:152592184 LCE3A [-3126bp] C - 13 T vs. C 0.442 (C) 0.367 (C) >1 (-) 38 (-) <0.05
rs477392 chr1:152555176 LCE3D [+2196bp] C - 13 C vs. G 0.442 (C) 0.367 (C) <1 (-) 36 (-) <0.05
rs6693105 chr1:152590663 LCE3B [+4089bp] C - 13 T vs. C 0.442 (T) 0.367 (T) <1 (-) 38 (-) <0.05
rs6702463 chr1:152598711 LCE3A [+3132bp] C - 13 A vs. T 0.45 (T) 0.367 (T) >1 (-) 39 (-) <0.05
rs4845446 chr1:152590750 LCE3B [+4176bp] C - 13 T vs. C 0.442 (T) 0.358 (T) <1 (-) 38 (-) <0.05
rs6701307 chr1:152590444 LCE3B [+3870bp] C - 13 A vs. G 0.442 (G) 0.367 (G) >1 (-) 38 (-) <0.05
rs4845453 chr1:152591953 LCE3A [-3357bp] C - 13 C vs. G 0.442 (G) 0.367 (G) >1 (-) 38 (-) <0.05
rs6700160 chr1:152593024 LCE3A [-2286bp] C - 13 A vs. C 0.442 (A) 0.375 (A) <1 (-) 40 (-) <0.05
rs4112787 chr1:152551325 LCE3D [-532bp] C - 13 T vs. C 0.442 (C) 0.383 (C) >1 (-) 37 (-) <0.05
rs6700290 chr1:152592978 LCE3A [-2332bp] C - 13 A vs. T 0.442 (T) 0.367 (T) >1 (-) 41 (-) <0.05
rs4085613 chr1:152550018 LCE3D [-1839bp] C - 13 T vs. G 0.442 (T) 0.358 (T) <1 (-) 38 (-) <0.05
rs6677595 chr1:152590187 LCE3B [+3613bp] C - 13 T vs. C 0.442 (C) 0.367 (C) >1 (-) 39 (-) <0.05
rs4112788 chr1:152551276 LCE3D [-581bp] C - 13 A vs. G 0.442 (A) 0.367 (A) <1 (-) 38 (-) <0.05
rs4845447 chr1:152590886 LCE3B [+4312bp] C - 13 T vs. C 0.442 (T) 0.367 (T) <1 (-) 36 (-) <0.05
rs1581803 chr1:152592281 LCE3A [-3029bp] C - 13 T vs. G 0.442 (G) 0.367 (G) >1 (-) 38 (-) <0.05
rs4845459 chr1:152603842 LCE3A [+8263bp] C - 13 A vs. C 0.45 (C) 0.383 (C) >1 (-) 41 (-) <0.05
rs72702813 chr1:152600854 LCE3A [+5275bp] C - 12 T vs. G 0.058 (T) - <1 (-) 0 (-) <0.05
rs6691451 chr1:152594369 LCE3A [-941bp] C - 13 T vs. C 0.225 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs4845314 chr1:152554597 LCE3D [+1617bp] C - 13 T vs. G 0.225 (T) 0.317 (T) >1 (-) 2 (-) <0.05
rs4112789 chr1:152555005 LCE3D [+2025bp] C - 13 T vs. C 0.225 (T) 0.308 (T) >1 (-) 2 (-) <0.05
rs11810844 chr1:152553365 LCE3D [+385bp] C - 13 T vs. C 0.225 (T) 0.325 (T) >1 (-) 1 (-) <0.05
rs4845313 chr1:152552461 LCE3D C - 13 A vs. C 0.217 (A) 0.325 (A) >1 (-) 0 (-) <0.05
rs12030223 chr1:152593292 LCE3A [-2018bp] C - 13 A vs. G 0.225 (A) 0.342 (A) >1 (-) 0 (-) <0.05
rs4845451 chr1:152591562 LCE3A [-3748bp] C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs68127463 chr1:152590124 LCE3B [+3550bp] C - 13 T vs. C 0.225 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs6701730 chr1:152590890 LCE3B [+4316bp] C - 13 A vs. G 0.225 (A) 0.342 (A) >1 (-) 0 (-) <0.05
rs4845458 chr1:152601037 LCE3A [+5458bp] C - 13 A vs. G 0.217 (A) 0.342 (A) >1 (-) 0 (-) <0.05
rs149473377 chr1:152602292 LCE3A [+6713bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs1886734 chr1:152591142 LCE3A [-4168bp] C - 12 A vs. C 0.442 (A) 0.367 (A) <1 (-) 26 (-) >0.05
rs9633406 chr1:152591446 LCE3A [-3864bp] C - 12 C vs. G 0.442 (C) 0.367 (C) <1 (-) 26 (-) >0.05
rs4845450 chr1:152591200 LCE3A [-4110bp] C - 12 T vs. C 0.442 (T) 0.367 (T) <1 (-) 26 (-) >0.05
rs4845452 chr1:152591647 LCE3A [-3663bp] C - 12 A vs. G 0.442 (A) 0.367 (A) <1 (-) 26 (-) >0.05
rs10127681 chr1:152608912 LCE3A [+13333bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs10127682 chr1:152608918 LCE3A [+13339bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs35903848 chr1:152608916 LCE3A [+13337bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs12037364 chr1:152607847 LCE3A [+12268bp] C - 13 T vs. C 0.333 (C) 0.292 (C) <1 (-) 0 (-) >0.05
rs41267636 chr1:152627991 LCE2D [-7881bp] C - 12 T vs. C 0.042 (T) 0.008 (T) >1 (-) 0 (-) >0.05
rs12046943 chr1:152607855 LCE3A [+12276bp] C - 13 T vs. C 0.325 (T) 0.292 (T) >1 (-) 0 (-) >0.05
rs12564254 chr1:152602512 LCE3A [+6933bp] C - 13 A vs. G 0.333 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs7522480 chr1:152608876 LCE3A [+13297bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs11589292 chr1:152606950 LCE3A [+11371bp] C - 13 T vs. C 0.333 (T) 0.292 (T) >1 (-) 0 (-) >0.05
rs6671975 chr1:152613631 LCE3A [+18052bp] C - 13 T vs. C 0.333 (T) 0.275 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]