HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275194 chr6:32656334 HLA-DQB1 [+20174bp] All: C 93,567 12 C vs. T 0.317 (C) 0.442 (T) 0.90 (0.85-0.95) 0 (0-33) 4.41e-05
rs9271601 chr6:32591337 HLA-DQA1 [-4619bp] C - 6 A vs. T 0.45 (T) 0.483 (T) >1 (-) 0 (-) <1.00e-04
rs3129754 chr6:32583046 HLA-DQA1 [-12910bp] All: C 45,262 5 A vs. G 0.483 (A) 0.325 (G) 1.19 (1.09-1.29) 23 (0-69) 5.64e-05
rs9275495 chr6:32673574 HLA-DQA2 [-35545bp] C - 10 A vs. T 0.167 (T) 0.067 (T) >1 (-) 22 (-) <1.00e-04
rs28383233 chr6:32584153 HLA-DQA1 [-11803bp] C - 4 A vs. G 0.342 (G) 0.442 (A) <1 (-) 0 (-) <1.00e-04
rs9271650 chr6:32592383 HLA-DQA1 [-3573bp] All: C 44,247 3 T vs. C 0.267 (T) - 1.16 (1.08-1.25) 16 (0-91) 6.51e-05
rs28383221 chr6:32583212 HLA-DQA1 [-12744bp] C - 4 A vs. G 0.375 (A) 0.45 (G) >1 (-) 0 (-) <1.00e-04
rs9271763 chr6:32594061 HLA-DQA1 [-1895bp] All: C 44,247 3 A vs. G 0.433 (A) 0.475 (A) 1.16 (1.08-1.25) 27 (0-92) 7.46e-05
rs4587163 chr6:32593167 HLA-DQA1 [-2789bp] All: C 44,247 3 T vs. C 0.383 (T) 0.492 (T) 0.86 (0.80-0.93) 27 (0-92) 7.47e-05
rs9275171 chr6:32653972 HLA-DQB1 [+17812bp] All: C 93,567 12 G vs. A 0.292 (G) 0.483 (G) 0.91 (0.86-0.95) 0 (0-42) 7.53e-05
rs9275167 chr6:32653263 HLA-DQB1 [+17103bp] C - 10 A vs. G 0.208 (G) 0.075 (G) >1 (-) 7 (-) <1.00e-04
rs3104369 chr6:32602482 HLA-DQA1 All: C 45,262 5 T vs. C 0.292 (T) 0.25 (T) 1.15 (1.07-1.23) 34 (0-75) 7.81e-05
rs9275175 chr6:32654147 HLA-DQB1 [+17987bp] All: C 93,567 12 A vs. G 0.292 (A) 0.5 (A) 0.91 (0.86-0.95) 0 (0-42) 8.03e-05
rs9275176 chr6:32654157 HLA-DQB1 [+17997bp] All: C 93,567 12 G vs. A 0.283 (G) 0.5 (G) 0.91 (0.86-0.95) 0 (0-43) 8.04e-05
rs28752514 chr6:32583576 HLA-DQA1 [-12380bp] C - 4 T vs. C 0.367 (T) 0.408 (C) >1 (-) 0 (-) <1.00e-04
rs3129760 chr6:32585409 HLA-DQA1 [-10547bp] All: C 84,927 7 A vs. G - - 0.82 (0.75-0.91) 46 (0-77) 9.04e-05
rs9271721 chr6:32593519 HLA-DQA1 [-2437bp] All: C 44,247 3 G vs. A 0.225 (G) 0.258 (G) 1.17 (1.08-1.27) 47 (0-84) 9.37e-05
rs9271548 chr6:32590234 HLA-DQA1 [-5722bp] C - 9 A vs. T 0.425 (A) 0.392 (A) >1 (-) 0 (-) <1.00e-04
rs9275187 chr6:32656038 HLA-DQB1 [+19878bp] All: C 93,567 12 C vs. T 0.308 (C) - 0.91 (0.87-0.96) 0 (0-26) 9.52e-05
rs3129751 chr6:32582189 HLA-DQA1 [-13767bp] All: C 42,293 4 C vs. A 0.267 (C) 0.05 (C) 0.82 (0.74-0.91) 0 (0-83) 9.74e-05
rs9275192 chr6:32656305 HLA-DQB1 [+20145bp] All: C 93,567 12 G vs. A - - 1.12 (1.06-1.18) 0 (0-32) 1.08e-04
rs9275193 chr6:32656306 HLA-DQB1 [+20146bp] All: C 93,567 12 C vs. A - - 1.12 (1.06-1.18) 0 (0-32) 1.08e-04
rs3129755 chr6:32583057 HLA-DQA1 [-12899bp] C - 4 A vs. G 0.425 (A) 0.317 (G) >1 (-) 0 (-) <0.05
rs1966002 chr6:32581684 HLA-DQA1 [-14272bp] All: C 45,262 5 T vs. G - - 1.14 (1.07-1.22) 53 (0-83) 1.23e-04
rs9275188 chr6:32656136 HLA-DQB1 [+19976bp] All: C 93,567 12 T vs. C 0.35 (T) 0.392 (C) 0.91 (0.86-0.95) 0 (0-42) 1.23e-04
rs9275563 chr6:32677912 HLA-DQA2 [-31207bp] All: C 103,235 14 T vs. C 0.45 (T) 0.442 (T) 0.94 (0.91-0.97) 0 (0-46) 1.23e-04
rs9271180 chr6:32578209 HLA-DQA1 [-17747bp] All: C 84,927 7 C vs. T 0.367 (C) 0.2 (C) 1.11 (1.05-1.17) 0 (0-60) 1.29e-04
rs3104415 chr6:32582577 HLA-DQA1 [-13379bp] All: C 45,262 5 C vs. A 0.408 (C) 0.292 (C) 0.87 (0.81-0.93) 8 (0-81) 1.34e-04
rs35940802 chr6:32584355 HLA-DQA1 [-11601bp] All: C 11,858 4 A vs. G 0.5 (A) 0.158 (G) 1.23 (1.11-1.37) 0 (0-61) 1.36e-04
rs9271593 chr6:32591198 HLA-DQA1 [-4758bp] All: C 93,766 12 C vs. T 0.358 (C) 0.35 (C) 1.09 (1.04-1.14) 43 (0-71) 1.39e-04
rs4959103 chr6:32583125 HLA-DQA1 [-12831bp] All: C 45,262 5 T vs. C 0.475 (T) 0.483 (C) 1.14 (1.07-1.23) 25 (0-70) 1.41e-04
rs4959104 chr6:32583129 HLA-DQA1 [-12827bp] All: C 45,262 5 T vs. C 0.475 (T) 0.475 (C) 1.14 (1.07-1.23) 25 (0-70) 1.41e-04
rs34028938 chr6:32584346 HLA-DQA1 [-11610bp] All: C 11,858 4 A vs. C 0.492 (A) 0.167 (A) 0.81 (0.73-0.91) 0 (0-60) 1.42e-04
rs9275184 chr6:32654714 HLA-DQB1 [+18554bp] C - 10 T vs. C 0.175 (C) 0.058 (C) >1 (-) 17 (-) <0.05
rs34136174 chr6:32583682 HLA-DQA1 [-12274bp] All: C 45,262 5 A vs. C 0.483 (A) 0.425 (C) 1.14 (1.07-1.22) 25 (0-70) 1.55e-04
rs36124427 chr6:32583677 HLA-DQA1 [-12279bp] All: C 45,262 5 T vs. C 0.483 (T) 0.458 (C) 1.14 (1.07-1.22) 25 (0-70) 1.55e-04
rs9275201 chr6:32656723 HLA-DQB1 [+20563bp] C - 10 A vs. G - - <1 (-) 14 (-) <0.05
rs4959106 chr6:32583159 HLA-DQA1 [-12797bp] All: C 45,262 5 T vs. C 0.492 (T) 0.408 (C) 1.14 (1.07-1.22) 27 (0-71) 1.67e-04
rs9271149 chr6:32577455 HLA-DQA1 [-18501bp] All: C 84,927 7 A vs. G 0.367 (A) 0.192 (A) 1.11 (1.05-1.17) 0 (0-59) 1.67e-04
rs9275203 chr6:32656947 HLA-DQB1 [+20787bp] C - 10 A vs. G - - <1 (-) 13 (-) <0.05
rs6905775 chr6:32626021 HLA-DQB1 [-1223bp] C - 4 A vs. G 0.217 (A) 0.325 (A) <1 (-) 0 (-) <0.05
rs9271776 chr6:32594341 HLA-DQA1 [-1615bp] All: C 44,247 3 C vs. T 0.375 (C) 0.392 (C) 0.89 (0.84-0.95) 0 (0-44) 1.71e-04
rs9271179 chr6:32578196 HLA-DQA1 [-17760bp] All: C 84,927 7 G vs. A 0.35 (G) 0.2 (G) 1.11 (1.05-1.17) 0 (0-62) 1.74e-04
rs9271774 chr6:32594309 HLA-DQA1 [-1647bp] All: C 80,956 5 A vs. C 0.233 (A) 0.25 (A) 1.12 (1.06-1.19) 60 (0-85) 1.76e-04
rs28383314 chr6:32587213 HLA-DQA1 [-8743bp] All: C 96,077 11 T vs. C 0.317 (T) 0.233 (T) 1.10 (1.05-1.16) 27 (0-64) 1.77e-04
rs34850435 chr6:32583299 HLA-DQA1 [-12657bp] All: C 45,262 5 C vs. T 0.475 (C) 0.433 (T) 1.14 (1.06-1.22) 28 (0-72) 1.81e-04
rs9271178 chr6:32578191 HLA-DQA1 [-17765bp] All: C 84,927 7 C vs. T 0.35 (C) 0.2 (C) 1.11 (1.05-1.17) 0 (0-62) 1.82e-04
rs9275189 chr6:32656137 HLA-DQB1 [+19977bp] All: C 93,567 12 G vs. A 0.35 (G) - 0.91 (0.86-0.96) 0 (0-44) 1.83e-04
rs1846190 chr6:32583813 HLA-DQA1 [-12143bp] All: C 42,293 4 A vs. G 0.367 (A) 0.317 (A) 0.85 (0.78-0.93) 0 (0-79) 1.92e-04
rs9275221 chr6:32659099 HLA-DQB1 [+22939bp] C - 10 T vs. C 0.158 (C) 0.1 (C) >1 (-) 11 (-) <0.05

Association studies for this region [+]