HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
rs9275300 chr6:32664126 HLA-DQB1 [+27966bp] All: C 103,235 14 G vs. A 0.175 (G) 0.083 (G) 0.82 (0.77-0.86) 0 (0-52) 3.45e-12
rs9275293 chr6:32663308 HLA-DQB1 [+27148bp] All: C 103,235 14 C vs. T 0.175 (C) - 0.81 (0.77-0.86) 0 (0-52) 3.79e-12
rs9275296 chr6:32663431 HLA-DQB1 [+27271bp] All: C 103,235 14 C vs. T 0.175 (C) - 0.82 (0.77-0.86) 0 (0-52) 3.85e-12
rs9275275 chr6:32662607 HLA-DQB1 [+26447bp] All: C 103,235 14 A vs. G 0.175 (A) 0.083 (A) 0.81 (0.77-0.86) 0 (0-52) 7.90e-12
rs3997868 chr6:32578590 HLA-DQA1 [-17366bp] All: C 105,041 14 A vs. G - - 1.18 (1.13-1.24) 36 (0-66) 1.61e-11
rs562289 chr6:32577046 HLA-DQA1 [-18910bp] All: C 105,041 14 C vs. T - - 1.21 (1.14-1.28) 33 (0-65) 1.84e-11
rs9275152 chr6:32652196 HLA-DQB1 [+16036bp] All: C 93,567 12 C vs. T 0.183 (C) 0.083 (C) 0.78 (0.72-0.84) 0 (0-55) 1.26e-10
rs660895 chr6:32577380 HLA-DQA1 [-18576bp] All: C 105,041 14 G vs. A 0.283 (G) 0.25 (G) 0.88 (0.84-0.91) 33 (0-65) 2.24e-10
rs9275163 chr6:32652880 HLA-DQB1 [+16720bp] All: C 93,567 12 C vs. A 0.175 (C) 0.058 (C) 0.79 (0.74-0.85) 0 (0-56) 2.36e-10
rs9271148 chr6:32577442 HLA-DQA1 [-18514bp] C - 5 A vs. T 0.208 (T) 0.158 (T) <1 (-) 0 (-) <5.00e-08
rs9271597 chr6:32591291 HLA-DQA1 [-4665bp] All: C 89,810 10 A vs. T 0.467 (A) 0.467 (A) 0.87 (0.83-0.92) 14 (0-56) 3.41e-08
rs535852 chr6:32577604 HLA-DQA1 [-18352bp] All: C 99,521 13 T vs. C 0.483 (T) 0.333 (T) 0.90 (0.87-0.94) 26 (0-62) 9.04e-08
rs5021726 chr6:32578481 HLA-DQA1 [-17475bp] All: C 99,521 13 T vs. C - - 1.11 (1.07-1.15) 28 (0-63) 9.81e-08
rs2516052 chr6:32570147 HLA-DRB1 [+12522bp] All: C 102,072 13 A vs. G - - 1.11 (1.07-1.15) 0 (0-34) 1.12e-07
rs536810 chr6:32577497 HLA-DQA1 [-18459bp] All: C 99,521 13 T vs. C 0.475 (T) 0.317 (T) 0.91 (0.87-0.94) 24 (0-60) 1.50e-07
rs2516051 chr6:32570184 HLA-DRB1 [+12559bp] All: C 102,072 13 T vs. C 0.392 (T) 0.192 (T) 0.90 (0.87-0.94) 0 (0-36) 1.69e-07
rs9275159 chr6:32652607 HLA-DQB1 [+16447bp] All: C 93,567 12 T vs. C 0.267 (T) 0.442 (T) 0.84 (0.79-0.90) 0 (0-20) 1.75e-07
rs9271600 chr6:32591332 HLA-DQA1 [-4624bp] All: C 86,977 9 G vs. T 0.458 (G) 0.492 (G) 0.87 (0.83-0.92) 18 (0-60) 1.94e-07
rs5021727 chr6:32578633 HLA-DQA1 [-17323bp] All: C 99,521 13 A vs. G 0.492 (A) 0.433 (G) 1.11 (1.07-1.15) 28 (0-62) 2.17e-07
rs532098 chr6:32578052 HLA-DQA1 [-17904bp] All: C 99,521 13 G vs. A 0.5 (G) 0.45 (A) 1.09 (1.06-1.13) 26 (0-62) 2.17e-07
rs17204995 chr6:32578328 HLA-DQA1 [-17628bp] All: C 99,521 13 G vs. A 0.5 (G) 0.433 (A) 1.10 (1.06-1.15) 27 (0-62) 2.22e-07
rs622137 chr6:32569852 HLA-DRB1 [+12227bp] All: C 102,072 13 A vs. G 0.4 (A) 0.2 (A) 0.91 (0.88-0.94) 0 (0-38) 2.29e-07
rs477515 chr6:32569691 HLA-DRB1 [+12066bp] All: C 102,072 13 A vs. G 0.408 (A) 0.217 (A) 0.91 (0.88-0.94) 0 (0-39) 2.78e-07
rs9275211 chr6:32657844 HLA-DQB1 [+21684bp] All: C 93,567 12 C vs. T 0.267 (C) 0.242 (C) 0.87 (0.83-0.92) 0 (0-50) 2.83e-07
rs502803 chr6:32578958 HLA-DQA1 [-16998bp] All: C 99,521 13 G vs. A 0.492 (G) 0.433 (A) 1.12 (1.07-1.16) 29 (0-63) 2.96e-07
rs9270917 chr6:32572294 HLA-DRB1 [+14669bp] All: C 8,889 3 G vs. T 0.258 (G) 0.183 (G) 1.39 (1.23-1.58) 28 (0-93) 3.17e-07
rs9275183 chr6:32654502 HLA-DQB1 [+18342bp] All: C 93,567 12 G vs. A 0.192 (G) 0.217 (G) 0.86 (0.81-0.91) 0 (0-33) 4.16e-07
rs9271155 chr6:32577586 HLA-DQA1 [-18370bp] C - 4 A vs. G 0.217 (G) 0.167 (G) <1 (-) 10 (-) <1.00e-06
rs9270997 chr6:32574374 HLA-DRB1 [+16749bp] C - 5 A vs. G 0.2 (G) 0.15 (G) <1 (-) 0 (-) <1.00e-06
rs9270980 chr6:32573909 HLA-DRB1 [+16284bp] C - 5 A vs. C 0.2 (C) 0.158 (C) <1 (-) 0 (-) <1.00e-06
rs9270986 chr6:32574060 HLA-DRB1 [+16435bp] C - 5 A vs. C 0.208 (A) 0.158 (A) >1 (-) 0 (-) <1.00e-06
rs9271161 chr6:32577713 HLA-DQA1 [-18243bp] All: C 84,927 7 T vs. C 0.208 (T) 0.15 (T) 1.18 (1.10-1.26) 49 (0-79) 8.32e-07
rs556025 chr6:32570880 HLA-DRB1 [+13255bp] C - 11 T vs. C 0.408 (T) 0.175 (T) <1 (-) 0 (-) <1.00e-06
rs9270815 chr6:32569859 HLA-DRB1 [+12234bp] C - 4 A vs. G 0.2 (A) 0.167 (A) >1 (-) 9 (-) <1.00e-06
rs9271085 chr6:32576152 HLA-DRB1 [+18527bp] C - 4 T vs. C 0.258 (T) 0.167 (T) >1 (-) 14 (-) <1.00e-06
rs9271152 chr6:32577531 HLA-DQA1 [-18425bp] All: C 84,927 7 T vs. G 0.208 (T) 0.158 (T) 1.18 (1.10-1.26) 50 (0-79) 8.64e-07
rs9271062 chr6:32575575 HLA-DRB1 [+17950bp] C - 4 A vs. T 0.225 (T) 0.158 (T) <1 (-) 18 (-) <1.00e-04
rs9271061 chr6:32575544 HLA-DRB1 [+17919bp] C - 4 A vs. T 0.2 (A) 0.158 (A) >1 (-) 19 (-) <1.00e-04
rs9271056 chr6:32575378 HLA-DRB1 [+17753bp] C - 4 T vs. C 0.217 (T) 0.158 (T) >1 (-) 20 (-) <1.00e-04
rs9271055 chr6:32575369 HLA-DRB1 [+17744bp] C - 4 T vs. G 0.225 (G) 0.158 (G) <1 (-) 20 (-) <1.00e-04
rs34039593 chr6:32570311 HLA-DRB1 [+12686bp] C - 11 T vs. G 0.275 (G) 0.158 (G) >1 (-) 24 (-) <1.00e-04
rs9271203 chr6:32578885 HLA-DQA1 [-17071bp] All: C 52,167 6 T vs. C 0.208 (T) 0.158 (T) 1.21 (1.12-1.30) 52 (0-81) 1.44e-06
rs9271191 chr6:32578449 HLA-DQA1 [-17507bp] All: C 52,167 6 T vs. C 0.208 (T) 0.158 (T) 1.21 (1.12-1.30) 51 (0-81) 1.51e-06
rs9271589 chr6:32591128 HLA-DQA1 [-4828bp] All: C 84,927 7 A vs. G 0.383 (A) 0.375 (A) 0.87 (0.82-0.92) 0 (0-68) 1.73e-06
rs2647062 chr6:32570417 HLA-DRB1 [+12792bp] C - 11 A vs. C 0.25 (C) 0.142 (C) >1 (-) 19 (-) <1.00e-04
rs9271584 chr6:32590870 HLA-DQA1 [-5086bp] All: C 84,927 7 C vs. T 0.383 (C) 0.375 (C) 0.87 (0.82-0.92) 0 (0-66) 2.19e-06
rs9271585 chr6:32590879 HLA-DQA1 [-5077bp] All: C 84,927 7 A vs. C 0.383 (A) 0.375 (A) 0.87 (0.82-0.92) 0 (0-66) 2.20e-06
rs9275205 chr6:32657560 HLA-DQB1 [+21400bp] All: C 93,567 12 C vs. T 0.233 (C) 0.225 (C) 0.89 (0.85-0.94) 0 (0-45) 2.50e-06
rs9270936 chr6:32572755 HLA-DRB1 [+15130bp] C - 4 A vs. T 0.25 (A) 0.208 (A) >1 (-) 17 (-) <1.00e-04

Association studies for this region [+]