HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs35142753 chr6:32590183 HLA-DQA1 [-5773bp] C - 8 T vs. G 0.183 (T) 0.133 (T) >1 (-) 43 (-) <0.05
rs2856679 chr6:32655615 HLA-DQB1 [+19455bp] C - 10 A vs. C 0.417 (A) 0.242 (C) <1 (-) 41 (-) <0.05
rs34492195 chr6:32670833 HLA-DQB1 [+34673bp] C - 11 A vs. G 0.15 (A) 0.033 (A) >1 (-) 67 (-) <0.05
rs34810547 chr6:32590184 HLA-DQA1 [-5772bp] C - 8 T vs. C 0.183 (T) 0.133 (T) >1 (-) 43 (-) <0.05
rs3135004 chr6:32586420 HLA-DQA1 [-9536bp] C - 11 A vs. G - - >1 (-) 47 (-) <0.05
rs1063355 chr6:32627714 HLA-DQB1 C - 7 T vs. G 0.475 (T) 0.417 (T) >1 (-) 29 (-) <0.05
rs9273426 chr6:32627434 HLA-DQB1 C - 7 A vs. C - - >1 (-) 34 (-) <0.05
rs3104402 chr6:32681676 HLA-DQA2 [-27443bp] C - 7 T vs. G 0.125 (T) - >1 (-) 29 (-) <0.05
rs4636067 chr6:32578621 HLA-DQA1 [-17335bp] C - 5 T vs. G 0.142 (T) 0.025 (T) <1 (-) 0 (-) <0.05
rs17211356 chr6:32578426 HLA-DQA1 [-17530bp] C - 5 A vs. G 0.15 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs112123216 chr6:32591953 HLA-DQA1 [-4003bp] C - 8 T vs. C 0.2 (C) 0.108 (C) <1 (-) 42 (-) <0.05
rs9275285 chr6:32663080 HLA-DQB1 [+26920bp] C - 12 A vs. G 0.475 (G) 0.417 (A) >1 (-) 28 (-) <0.05
rs9275264 chr6:32662372 HLA-DQB1 [+26212bp] C - 12 A vs. G - - >1 (-) 31 (-) <0.05
rs2647046 chr6:32668336 HLA-DQB1 [+32176bp] C - 12 A vs. C 0.408 (A) 0.242 (A) >1 (-) 29 (-) <0.05
rs9271221 chr6:32579363 HLA-DQA1 [-16593bp] C - 5 T vs. G 0.442 (G) - <1 (-) 46 (-) <0.05
rs17205002 chr6:32578346 HLA-DQA1 [-17610bp] C - 5 A vs. G 0.15 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs2856722 chr6:32667958 HLA-DQB1 [+31798bp] C - 12 A vs. G 0.442 (A) 0.217 (A) >1 (-) 32 (-) <0.05
rs2858310 chr6:32668323 HLA-DQB1 [+32163bp] C - 12 A vs. G 0.408 (G) 0.242 (G) <1 (-) 29 (-) <0.05
rs9271226 chr6:32579451 HLA-DQA1 [-16505bp] C - 5 T vs. G 0.5 (G) - <1 (-) 47 (-) <0.05
rs9273430 chr6:32627460 HLA-DQB1 C - 7 T vs. G - - >1 (-) 34 (-) <0.05
rs9273444 chr6:32627635 HLA-DQB1 C - 7 T vs. G - - >1 (-) 31 (-) <0.05
rs9273445 chr6:32627646 HLA-DQB1 C - 7 A vs. G - - >1 (-) 31 (-) <0.05
rs6457620 chr6:32663999 HLA-DQB1 [+27839bp] C - 12 C vs. G 0.492 (G) 0.45 (G) <1 (-) 10 (-) <0.05
rs9275110 chr6:32649723 HLA-DQB1 [+13563bp] C - 6 T vs. C 0.267 (C) 0.383 (C) >1 (-) 0 (-) <0.05
rs9275111 chr6:32649735 HLA-DQB1 [+13575bp] C - 6 T vs. G 0.258 (T) 0.425 (T) <1 (-) 0 (-) <0.05
rs9271225 chr6:32579420 HLA-DQA1 [-16536bp] C - 5 A vs. C - - <1 (-) 46 (-) <0.05
rs36206058 chr6:32626920 HLA-DQB1 [-324bp] C - 3 C vs. G - - >1 (-) 47 (-) <0.05
rs9273382 chr6:32626925 HLA-DQB1 [-319bp] C - 3 A vs. G 0.475 (G) 0.475 (A) >1 (-) 47 (-) <0.05
rs9275288 chr6:32663203 HLA-DQB1 [+27043bp] C - 12 A vs. G 0.492 (G) 0.417 (A) >1 (-) 21 (-) <0.05
rs3135190 chr6:32667946 HLA-DQB1 [+31786bp] C - 12 T vs. G 0.283 (T) 0.125 (T) >1 (-) 28 (-) <0.05
rs9275480 chr6:32672668 HLA-DQA2 [-36451bp] C - 12 A vs. G 0.3 (A) 0.225 (A) <1 (-) 56 (-) <0.05
rs2858324 chr6:32660375 HLA-DQB1 [+24215bp] C - 12 A vs. G 0.417 (A) 0.233 (A) >1 (-) 38 (-) <0.05
rs9273443 chr6:32627600 HLA-DQB1 C - 7 T vs. G 0.492 (G) 0.433 (G) <1 (-) 32 (-) <0.05
rs9275478 chr6:32672654 HLA-DQA2 [-36465bp] C - 12 T vs. G 0.317 (T) 0.217 (T) <1 (-) 56 (-) <0.05
rs9275479 chr6:32672659 HLA-DQA2 [-36460bp] C - 12 T vs. C 0.308 (T) 0.217 (T) <1 (-) 56 (-) <0.05
rs3828790 chr6:32635809 HLA-DQB1 C - 4 T vs. C 0.492 (T) 0.467 (T) >1 (-) 0 (-) <0.05
rs9271223 chr6:32579372 HLA-DQA1 [-16584bp] C - 5 T vs. C 0.458 (T) - >1 (-) 46 (-) <0.05
rs2858331 chr6:32681277 HLA-DQA2 [-27842bp] C - 12 A vs. G 0.317 (G) 0.4 (G) <1 (-) 28 (-) <0.05
rs9275168 chr6:32653676 HLA-DQB1 [+17516bp] C - 10 T vs. C 0.45 (C) 0.225 (T) >1 (-) 40 (-) <0.05
rs3129719 chr6:32661779 HLA-DQB1 [+25619bp] C - 11 T vs. G 0.292 (T) 0.125 (T) >1 (-) 34 (-) <0.05
rs9275514 chr6:32674566 HLA-DQA2 [-34553bp] C - 12 A vs. T 0.458 (T) 0.458 (T) <1 (-) 21 (-) <0.05
rs9273373 chr6:32626601 HLA-DQB1 [-643bp] C - 3 A vs. G - - >1 (-) 37 (-) <0.05
rs55703642 chr6:32578198 HLA-DQA1 [-17758bp] C - 5 T vs. C 0.142 (C) - >1 (-) 1 (-) <0.05
rs2894381 chr6:32682228 HLA-DQA2 [-26891bp] C - 11 A vs. G 0.2 (A) 0.342 (A) >1 (-) 13 (-) <0.05
rs1140347 chr6:32628022 HLA-DQB1 C - 7 A vs. G 0.475 (A) 0.467 (A) >1 (-) 37 (-) <0.05
rs9275277 chr6:32662677 HLA-DQB1 [+26517bp] C - 12 A vs. G 0.483 (A) 0.475 (G) <1 (-) 27 (-) <0.05
rs9275292 chr6:32663289 HLA-DQB1 [+27129bp] C - 12 A vs. C 0.492 (A) 0.433 (C) <1 (-) 23 (-) <0.05
rs1063345 chr6:32627976 HLA-DQB1 C - 7 A vs. G 0.492 (G) 0.492 (A) <1 (-) 36 (-) <0.05
rs5000633 chr6:32663610 HLA-DQB1 [+27450bp] C - 12 A vs. C 0.492 (A) 0.425 (C) <1 (-) 25 (-) <0.05
rs9271218 chr6:32579327 HLA-DQA1 [-16629bp] C - 5 T vs. G - - <1 (-) 45 (-) <0.05

Association studies for this region [+]