HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9273356 chr6:32625989 HLA-DQB1 [-1255bp] C - 3 A vs. G - - >1 (-) 45 (-) <0.05
rs9275555 chr6:32677088 HLA-DQA2 [-32031bp] C - 12 T vs. C 0.308 (T) 0.242 (T) <1 (-) 69 (-) <0.05
rs9275536 chr6:32675829 HLA-DQA2 [-33290bp] C - 12 A vs. G 0.425 (A) 0.425 (A) >1 (-) 24 (-) <0.05
rs2856684 chr6:32655095 HLA-DQB1 [+18935bp] C - 10 T vs. C 0.45 (C) 0.267 (T) >1 (-) 37 (-) <0.05
rs9273380 chr6:32626895 HLA-DQB1 [-349bp] C - 3 A vs. G - - <1 (-) 42 (-) <0.05
rs9271246 chr6:32580084 HLA-DQA1 [-15872bp] C - 5 A vs. G 0.35 (A) 0.183 (A) >1 (-) 44 (-) <0.05
rs3997871 chr6:32580456 HLA-DQA1 [-15500bp] C - 5 A vs. G 0.342 (G) 0.183 (G) <1 (-) 42 (-) <0.05
rs28752534 chr6:32585068 HLA-DQA1 [-10888bp] C - 3 T vs. C 0.35 (C) 0.175 (C) >1 (-) 25 (-) <0.05
rs79876547 chr6:32669137 HLA-DQB1 [+32977bp] C - 12 T vs. C - - <1 (-) 59 (-) <0.05
rs9271367 chr6:32586908 HLA-DQA1 [-9048bp] C - 10 A vs. G 0.358 (G) 0.233 (G) <1 (-) 28 (-) <0.05
rs9275578 chr6:32679384 HLA-DQA2 [-29735bp] C - 12 T vs. G 0.308 (T) 0.175 (T) <1 (-) 70 (-) <0.05
rs9275548 chr6:32676530 HLA-DQA2 [-32589bp] C - 12 T vs. C - - <1 (-) 70 (-) <0.05
rs9275547 chr6:32676525 HLA-DQA2 [-32594bp] C - 12 T vs. G - - >1 (-) 70 (-) <0.05
rs3134968 chr6:32674059 HLA-DQA2 [-35060bp] C - 10 A vs. G 0.275 (A) 0.092 (A) >1 (-) 16 (-) <0.05
rs9273417 chr6:32627352 HLA-DQB1 C - 5 A vs. G 0.5 (A) 0.45 (A) >1 (-) 26 (-) <0.05
rs9275517 chr6:32674649 HLA-DQA2 [-34470bp] C - 12 A vs. G 0.425 (A) 0.45 (A) >1 (-) 24 (-) <0.05
rs9275516 chr6:32674643 HLA-DQA2 [-34476bp] C - 12 A vs. G 0.425 (A) 0.45 (A) >1 (-) 24 (-) <0.05
rs4516986 chr6:32678323 HLA-DQA2 [-30796bp] C - 12 C vs. G 0.308 (C) 0.2 (C) <1 (-) 70 (-) <0.05
rs9271375 chr6:32587067 HLA-DQA1 [-8889bp] C - 3 A vs. G 0.483 (A) 0.217 (A) <1 (-) 18 (-) <0.05
rs3998180 chr6:32650897 HLA-DQB1 [+14737bp] C - 3 A vs. C 0.133 (A) 0.033 (A) <1 (-) 0 (-) <0.05
rs3135006 chr6:32667119 HLA-DQB1 [+30959bp] C - 12 T vs. C 0.292 (T) 0.125 (T) >1 (-) 27 (-) <0.05
rs2858318 chr6:32661302 HLA-DQB1 [+25142bp] C - 12 T vs. G 0.425 (T) 0.267 (T) >1 (-) 40 (-) <0.05
rs9271383 chr6:32587391 HLA-DQA1 [-8565bp] C - 3 T vs. C 0.433 (T) 0.475 (T) <1 (-) 19 (-) <0.05
rs9275527 chr6:32675378 HLA-DQA2 [-33741bp] C - 12 C vs. G 0.308 (G) 0.2 (G) >1 (-) 69 (-) <0.05
rs9275515 chr6:32674573 HLA-DQA2 [-34546bp] C - 12 T vs. C 0.467 (T) 0.417 (T) >1 (-) 24 (-) <0.05
rs2858321 chr6:32661166 HLA-DQB1 [+25006bp] C - 12 T vs. C 0.483 (T) 0.367 (C) <1 (-) 34 (-) <0.05
rs9271252 chr6:32580288 HLA-DQA1 [-15668bp] C - 5 C vs. G 0.358 (C) 0.158 (C) >1 (-) 45 (-) <0.05
rs9275281 chr6:32662920 HLA-DQB1 [+26760bp] C - 12 A vs. G 0.5 (G) 0.425 (G) <1 (-) 0 (-) <0.05
rs2856727 chr6:32666397 HLA-DQB1 [+30237bp] C - 12 T vs. C 0.417 (C) 0.242 (C) <1 (-) 35 (-) <0.05
rs9275545 chr6:32676355 HLA-DQA2 [-32764bp] C - 12 T vs. C 0.308 (T) 0.233 (T) <1 (-) 69 (-) <0.05
rs6689 chr6:32627700 HLA-DQB1 C - 7 A vs. G 0.192 (G) 0.2 (G) <1 (-) 22 (-) <0.05
rs9271251 chr6:32580241 HLA-DQA1 [-15715bp] C - 5 A vs. C 0.35 (C) 0.183 (C) <1 (-) 43 (-) <0.05
rs3104404 chr6:32682174 HLA-DQA2 [-26945bp] C - 11 A vs. C 0.117 (A) 0.275 (A) >1 (-) 17 (-) <0.05
rs9275199 chr6:32656680 HLA-DQB1 [+20520bp] C - 10 T vs. C 0.3 (T) 0.342 (C) <1 (-) 35 (-) <0.05
rs9275502 chr6:32673921 HLA-DQA2 [-35198bp] C - 11 A vs. G 0.308 (G) 0.317 (G) >1 (-) 68 (-) <0.05
rs9275501 chr6:32673920 HLA-DQA2 [-35199bp] C - 11 T vs. C 0.308 (T) 0.35 (T) <1 (-) 68 (-) <0.05
rs9275558 chr6:32677427 HLA-DQA2 [-31692bp] C - 12 T vs. G 0.308 (T) 0.25 (T) <1 (-) 69 (-) <0.05
rs2856723 chr6:32667762 HLA-DQB1 [+31602bp] C - 12 A vs. G 0.442 (A) 0.233 (A) >1 (-) 34 (-) <0.05
rs9273355 chr6:32625960 HLA-DQB1 [-1284bp] C - 3 A vs. G - - >1 (-) 47 (-) <0.05
rs3129784 chr6:32656608 HLA-DQB1 [+20448bp] C - 10 T vs. G 0.383 (T) - <1 (-) 40 (-) <0.05
rs2647012 chr6:32664458 HLA-DQB1 [+28298bp] C - 11 T vs. C 0.417 (T) 0.233 (T) >1 (-) 41 (-) <0.05
rs17219281 chr6:32675645 HLA-DQA2 [-33474bp] C - 10 A vs. G 0.075 (A) - <1 (-) 0 (-) <0.05
rs9275565 chr6:32677938 HLA-DQA2 [-31181bp] C - 12 T vs. C 0.417 (T) 0.375 (T) >1 (-) 22 (-) <0.05
rs9275564 chr6:32677927 HLA-DQA2 [-31192bp] C - 12 A vs. C 0.308 (A) 0.242 (A) <1 (-) 70 (-) <0.05
rs9273354 chr6:32625952 HLA-DQB1 [-1292bp] C - 3 C vs. G - - >1 (-) 46 (-) <0.05
rs9275506 chr6:32674083 HLA-DQA2 [-35036bp] C - 12 A vs. G 0.308 (A) 0.15 (A) <1 (-) 69 (-) <0.05
rs9275488 chr6:32673269 HLA-DQA2 [-35850bp] C - 12 A vs. G 0.3 (A) 0.258 (A) <1 (-) 55 (-) <0.05
rs9275489 chr6:32673272 HLA-DQA2 [-35847bp] C - 12 T vs. C 0.308 (T) 0.25 (T) <1 (-) 55 (-) <0.05
rs2647000 chr6:32656890 HLA-DQB1 [+20730bp] C - 10 T vs. C 0.425 (C) 0.3 (T) >1 (-) 41 (-) <0.05
rs2858319 chr6:32661294 HLA-DQB1 [+25134bp] C - 12 T vs. C 0.433 (T) 0.25 (T) >1 (-) 37 (-) <0.05

Association studies for this region [+]