HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2858317 chr6:32662280 HLA-DQB1 [+26120bp] C - 12 A vs. C - - <1 (-) 39 (-) <0.05
rs2646998 chr6:32665367 HLA-DQB1 [+29207bp] C - 12 T vs. G 0.425 (T) 0.242 (T) >1 (-) 36 (-) <0.05
rs9275320 chr6:32666469 HLA-DQB1 [+30309bp] C - 12 A vs. C 0.317 (C) 0.275 (C) >1 (-) 60 (-) <0.05
rs3997874 chr6:32580741 HLA-DQA1 [-15215bp] C - 5 A vs. G 0.342 (A) 0.183 (A) >1 (-) 40 (-) <0.05
rs9271240 chr6:32579833 HLA-DQA1 [-16123bp] C - 5 T vs. C - - >1 (-) 42 (-) <0.05
rs9275180 chr6:32654278 HLA-DQB1 [+18118bp] C - 10 T vs. C - - <1 (-) 38 (-) <0.05
rs35406540 chr6:32670368 HLA-DQB1 [+34208bp] C - 12 A vs. G 0.15 (G) 0.167 (G) <1 (-) 58 (-) <0.05
rs2856689 chr6:32654551 HLA-DQB1 [+18391bp] C - 10 A vs. G 0.417 (G) 0.267 (A) >1 (-) 32 (-) <0.05
rs9271241 chr6:32579870 HLA-DQA1 [-16086bp] C - 5 A vs. G - - <1 (-) 41 (-) <0.05
rs9275573 chr6:32679146 HLA-DQA2 [-29973bp] C - 12 C vs. G 0.433 (C) 0.383 (C) >1 (-) 22 (-) <0.05
rs4476871 chr6:32678867 HLA-DQA2 [-30252bp] C - 12 A vs. G 0.433 (G) 0.358 (G) <1 (-) 22 (-) <0.05
rs3998157 chr6:32678477 HLA-DQA2 [-30642bp] C - 12 A vs. C 0.425 (C) 0.375 (C) <1 (-) 22 (-) <0.05
rs9275572 chr6:32678999 HLA-DQA2 [-30120bp] C - 12 A vs. G 0.425 (A) 0.375 (A) >1 (-) 22 (-) <0.05
rs9271242 chr6:32579940 HLA-DQA1 [-16016bp] C - 5 T vs. C 0.35 (T) 0.183 (T) >1 (-) 42 (-) <0.05
rs9271243 chr6:32579951 HLA-DQA1 [-16005bp] C - 5 T vs. C 0.35 (C) 0.192 (C) <1 (-) 42 (-) <0.05
rs685810 chr6:32584952 HLA-DQA1 [-11004bp] C - 3 A vs. G 0.392 (G) 0.167 (G) >1 (-) 0 (-) <0.05
rs2856690 chr6:32654536 HLA-DQB1 [+18376bp] C - 10 A vs. T 0.425 (A) 0.267 (T) <1 (-) 30 (-) <0.05
rs2647040 chr6:32667280 HLA-DQB1 [+31120bp] C - 12 A vs. G 0.408 (A) 0.225 (A) >1 (-) 34 (-) <0.05
rs35122968 chr6:32682199 HLA-DQA2 [-26920bp] C - 11 T vs. C 0.092 (C) 0.083 (C) >1 (-) 0 (-) <0.05
rs9271258 chr6:32580446 HLA-DQA1 [-15510bp] C - 5 A vs. G 0.342 (G) 0.2 (G) <1 (-) 42 (-) <0.05
rs9271257 chr6:32580444 HLA-DQA1 [-15512bp] C - 5 A vs. G 0.342 (G) 0.217 (G) <1 (-) 42 (-) <0.05
rs28752526 chr6:32584918 HLA-DQA1 [-11038bp] C - 3 A vs. G - - >1 (-) 0 (-) <0.05
rs9275567 chr6:32678131 HLA-DQA2 [-30988bp] C - 12 A vs. G 0.442 (A) 0.392 (A) >1 (-) 22 (-) <0.05
rs9275570 chr6:32678199 HLA-DQA2 [-30920bp] C - 12 A vs. G 0.425 (G) 0.392 (G) <1 (-) 22 (-) <0.05
rs6932517 chr6:32678182 HLA-DQA2 [-30937bp] C - 12 C vs. G 0.425 (C) 0.375 (C) >1 (-) 22 (-) <0.05
rs9275538 chr6:32676017 HLA-DQA2 [-33102bp] C - 12 T vs. C 0.45 (T) 0.4 (T) >1 (-) 24 (-) <0.05
rs9275579 chr6:32679459 HLA-DQA2 [-29660bp] C - 12 A vs. T 0.308 (A) 0.242 (A) <1 (-) 69 (-) <0.05
rs3104407 chr6:32682452 HLA-DQA2 [-26667bp] C - 10 A vs. G 0.458 (A) 0.367 (G) <1 (-) 0 (-) <0.05
rs4273729 chr6:32678597 HLA-DQA2 [-30522bp] C - 12 C vs. G 0.433 (C) 0.375 (C) >1 (-) 23 (-) <0.05
rs9275518 chr6:32674700 HLA-DQA2 [-34419bp] C - 12 A vs. G 0.425 (G) - <1 (-) 23 (-) <0.05
rs9275556 chr6:32677190 HLA-DQA2 [-31929bp] C - 12 T vs. C 0.425 (C) 0.375 (C) <1 (-) 22 (-) <0.05
rs9275557 chr6:32677199 HLA-DQA2 [-31920bp] C - 12 T vs. C 0.425 (C) 0.367 (C) <1 (-) 22 (-) <0.05
rs9271247 chr6:32580112 HLA-DQA1 [-15844bp] C - 5 A vs. G 0.35 (A) 0.183 (A) >1 (-) 44 (-) <0.05
rs9275524 chr6:32675109 HLA-DQA2 [-34010bp] C - 12 T vs. C 0.425 (T) 0.375 (T) >1 (-) 23 (-) <0.05
rs2856670 chr6:32662904 HLA-DQB1 [+26744bp] C - 12 C vs. G 0.425 (G) 0.25 (G) <1 (-) 35 (-) <0.05
rs9275535 chr6:32675789 HLA-DQA2 [-33330bp] C - 12 A vs. G 0.433 (G) 0.425 (G) <1 (-) 23 (-) <0.05
rs9380318 chr6:32677669 HLA-DQA2 [-31450bp] C - 12 T vs. C 0.417 (C) 0.367 (C) <1 (-) 23 (-) <0.05
rs13191810 chr6:32586831 HLA-DQA1 [-9125bp] C - 3 T vs. C 0.283 (T) 0.158 (T) <1 (-) 41 (-) <0.05
rs28383313 chr6:32587117 HLA-DQA1 [-8839bp] C - 3 C vs. G 0.375 (G) 0.375 (G) >1 (-) 0 (-) <0.05
rs28451714 chr6:32671601 HLA-DQB1 [+35441bp] C - 11 T vs. G 0.15 (T) 0.167 (T) >1 (-) 63 (-) <0.05
rs2856725 chr6:32666738 HLA-DQB1 [+30578bp] C - 12 T vs. C 0.408 (C) 0.233 (C) <1 (-) 35 (-) <0.05
rs68037968 chr6:32669817 HLA-DQB1 [+33657bp] C - 12 T vs. C - - <1 (-) 59 (-) <0.05
rs9271260 chr6:32580507 HLA-DQA1 [-15449bp] C - 5 A vs. C 0.342 (A) 0.183 (A) >1 (-) 42 (-) <0.05
rs13213821 chr6:32585199 HLA-DQA1 [-10757bp] C - 3 A vs. G - - >1 (-) 0 (-) <0.05
rs9271248 chr6:32580157 HLA-DQA1 [-15799bp] C - 5 T vs. C 0.367 (C) 0.183 (C) <1 (-) 45 (-) <0.05
rs9275522 chr6:32674970 HLA-DQA2 [-34149bp] C - 12 T vs. C 0.308 (T) 0.242 (T) <1 (-) 69 (-) <0.05
rs9271576 chr6:32590612 HLA-DQA1 [-5344bp] C - 3 T vs. C 0.342 (C) 0.317 (C) >1 (-) 0 (-) <0.05
rs9271151 chr6:32577474 HLA-DQA1 [-18482bp] C - 4 T vs. G 0.383 (T) 0.2 (T) >1 (-) 9 (-) <0.05
rs9275540 chr6:32676139 HLA-DQA2 [-32980bp] C - 12 A vs. T 0.425 (T) 0.425 (T) <1 (-) 23 (-) <0.05
rs9271150 chr6:32577470 HLA-DQA1 [-18486bp] C - 4 T vs. G 0.392 (T) 0.183 (T) >1 (-) 10 (-) <0.05

Association studies for this region [+]