HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271068 chr6:32575674 HLA-DRB1 [+18049bp] C - 4 C vs. G 0.35 (C) 0.183 (C) >1 (-) 22 (-) <0.05
rs9271066 chr6:32575631 HLA-DRB1 [+18006bp] C - 4 A vs. G 0.35 (A) 0.2 (A) >1 (-) 26 (-) <0.05
rs9271060 chr6:32575513 HLA-DRB1 [+17888bp] C - 4 C vs. G 0.383 (C) 0.175 (C) >1 (-) 28 (-) <0.05
rs9271446 chr6:32588344 HLA-DQA1 [-7612bp] C - 3 A vs. G 0.442 (A) - >1 (-) 0 (-) <0.05
rs9271073 chr6:32575803 HLA-DRB1 [+18178bp] C - 4 T vs. G 0.35 (G) 0.183 (G) <1 (-) 22 (-) <0.05
rs9271176 chr6:32578127 HLA-DQA1 [-17829bp] C - 5 A vs. G 0.408 (A) 0.192 (A) >1 (-) 9 (-) <0.05
rs9271457 chr6:32588446 HLA-DQA1 [-7510bp] C - 3 T vs. C 0.483 (C) - <1 (-) 0 (-) <0.05
rs9270885 chr6:32571771 HLA-DRB1 [+14146bp] C - 4 A vs. G 0.425 (G) 0.208 (G) <1 (-) 17 (-) <0.05
rs9270983 chr6:32573973 HLA-DRB1 [+16348bp] C - 5 T vs. C 0.35 (T) 0.183 (T) >1 (-) 23 (-) <0.05
rs9270979 chr6:32573780 HLA-DRB1 [+16155bp] C - 5 A vs. G 0.333 (A) 0.183 (A) >1 (-) 24 (-) <0.05
rs9270971 chr6:32573598 HLA-DRB1 [+15973bp] C - 5 T vs. C 0.35 (T) 0.192 (T) >1 (-) 24 (-) <0.05
rs9270978 chr6:32573754 HLA-DRB1 [+16129bp] C - 5 A vs. T 0.35 (T) 0.183 (T) <1 (-) 24 (-) <0.05
rs9270977 chr6:32573748 HLA-DRB1 [+16123bp] C - 5 A vs. G 0.367 (A) 0.183 (A) >1 (-) 24 (-) <0.05
rs9270998 chr6:32574379 HLA-DRB1 [+16754bp] C - 5 A vs. G 0.35 (A) 0.175 (A) >1 (-) 23 (-) <0.05
rs9271074 chr6:32575849 HLA-DRB1 [+18224bp] C - 4 T vs. G 0.367 (G) 0.183 (G) <1 (-) 21 (-) <0.05
rs9270882 chr6:32571705 HLA-DRB1 [+14080bp] C - 4 C vs. G - - <1 (-) 15 (-) <0.05
rs9271075 chr6:32575852 HLA-DRB1 [+18227bp] C - 4 A vs. G 0.358 (A) 0.183 (A) >1 (-) 21 (-) <0.05
rs9271076 chr6:32575873 HLA-DRB1 [+18248bp] C - 4 A vs. G 0.35 (G) 0.183 (G) <1 (-) 21 (-) <0.05
rs9270970 chr6:32573574 HLA-DRB1 [+15949bp] C - 5 T vs. C 0.375 (C) 0.208 (C) <1 (-) 25 (-) <0.05
rs9270881 chr6:32571690 HLA-DRB1 [+14065bp] C - 4 T vs. C 0.442 (C) - <1 (-) 15 (-) <0.05
rs9270968 chr6:32573554 HLA-DRB1 [+15929bp] C - 5 T vs. C 0.4 (C) 0.217 (C) <1 (-) 25 (-) <0.05
rs9275154 chr6:32652435 HLA-DQB1 [+16275bp] C - 12 T vs. C 0.425 (T) 0.3 (C) <1 (-) 21 (-) <0.05
rs9271422 chr6:32587860 HLA-DQA1 [-8096bp] C - 4 A vs. G - - <1 (-) 24 (-) <0.05
rs9271174 chr6:32578040 HLA-DQA1 [-17916bp] C - 6 C vs. G 0.35 (C) 0.183 (C) >1 (-) 0 (-) <0.05
rs9271512 chr6:32589510 HLA-DQA1 [-6446bp] C - 4 A vs. G 0.425 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs9270969 chr6:32573560 HLA-DRB1 [+15935bp] C - 5 A vs. G 0.408 (A) 0.217 (A) >1 (-) 25 (-) <0.05
rs3135005 chr6:32586019 HLA-DQA1 [-9937bp] All: C 99,286 13 A vs. G 0.2 (A) 0.15 (A) 1.08 (1.03-1.13) 50 (5-73) 0.003
rs9275162 chr6:32652687 HLA-DQB1 [+16527bp] C - 12 T vs. C 0.425 (C) 0.275 (T) >1 (-) 21 (-) <0.05
rs9271087 chr6:32576170 HLA-DRB1 [+18545bp] C - 4 A vs. C - - <1 (-) 13 (-) <0.05
rs9270886 chr6:32571777 HLA-DRB1 [+14152bp] C - 4 A vs. G - - <1 (-) 19 (-) <0.05
rs9271004 chr6:32574579 HLA-DRB1 [+16954bp] C - 5 A vs. G - - <1 (-) 25 (-) <0.05
rs36173887 chr6:32602086 HLA-DQA1 C - 3 A vs. G 0.125 (G) - >1 (-) 52 (-) <0.05
rs9271078 chr6:32575930 HLA-DRB1 [+18305bp] C - 4 T vs. C 0.35 (C) 0.183 (C) <1 (-) 18 (-) <0.05
rs9271086 chr6:32576165 HLA-DRB1 [+18540bp] C - 4 A vs. T 0.417 (T) 0.192 (T) <1 (-) 14 (-) <0.05
rs9271024 chr6:32574954 HLA-DRB1 [+17329bp] C - 4 T vs. C - - >1 (-) 36 (-) <0.05
rs9270999 chr6:32574438 HLA-DRB1 [+16813bp] C - 5 A vs. G 0.35 (G) 0.175 (G) <1 (-) 23 (-) <0.05
rs9275155 chr6:32652484 HLA-DQB1 [+16324bp] C - 12 A vs. T 0.4 (A) 0.292 (T) <1 (-) 20 (-) <0.05
rs9275161 chr6:32652636 HLA-DQB1 [+16476bp] C - 12 T vs. C 0.383 (C) 0.3 (T) >1 (-) 22 (-) <0.05
rs9270921 chr6:32572326 HLA-DRB1 [+14701bp] C - 4 T vs. C 0.392 (C) 0.183 (C) <1 (-) 38 (-) <0.05
rs9270920 chr6:32572322 HLA-DRB1 [+14697bp] C - 4 T vs. C 0.392 (C) 0.183 (C) <1 (-) 38 (-) <0.05
rs9270962 chr6:32573434 HLA-DRB1 [+15809bp] C - 5 T vs. C 0.425 (C) 0.192 (C) <1 (-) 25 (-) <0.05
rs9271079 chr6:32576052 HLA-DRB1 [+18427bp] C - 4 C vs. G 0.35 (G) 0.192 (G) <1 (-) 13 (-) <0.05
rs9271083 chr6:32576102 HLA-DRB1 [+18477bp] C - 4 T vs. C 0.375 (T) 0.192 (T) >1 (-) 9 (-) <0.05
rs9271001 chr6:32574493 HLA-DRB1 [+16868bp] C - 5 A vs. C - - >1 (-) 25 (-) <0.05
rs9271467 chr6:32588613 HLA-DQA1 [-7343bp] C - 3 T vs. C 0.5 (C) 0.417 (T) >1 (-) 0 (-) <0.05
rs9271468 chr6:32588616 HLA-DQA1 [-7340bp] C - 3 A vs. G 0.5 (G) 0.417 (G) <1 (-) 0 (-) <0.05
rs9275158 chr6:32652582 HLA-DQB1 [+16422bp] C - 12 A vs. G 0.417 (A) 0.267 (G) <1 (-) 20 (-) <0.05
rs9271090 chr6:32576247 HLA-DRB1 [+18622bp] C - 4 T vs. C 0.383 (T) 0.183 (T) >1 (-) 7 (-) <0.05
rs9271092 chr6:32576296 HLA-DRB1 [+18671bp] C - 4 A vs. G 0.358 (A) 0.192 (A) >1 (-) 7 (-) <0.05
rs9271081 chr6:32576083 HLA-DRB1 [+18458bp] C - 4 A vs. G 0.383 (A) 0.192 (A) >1 (-) 14 (-) <0.05

Association studies for this region [+]