HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271383 chr6:32587391 HLA-DQA1 [-8565bp] C - 3 T vs. C 0.433 (T) 0.475 (T) <1 (-) 19 (-) <0.05
rs9271109 chr6:32576687 HLA-DRB1 [+19062bp] C - 4 T vs. C 0.383 (T) 0.208 (T) >1 (-) 45 (-) <0.05
rs2858321 chr6:32661166 HLA-DQB1 [+25006bp] C - 12 T vs. C 0.483 (T) 0.367 (C) <1 (-) 34 (-) <0.05
rs9271110 chr6:32576688 HLA-DRB1 [+19063bp] C - 4 A vs. G 0.392 (G) 0.233 (G) <1 (-) 45 (-) <0.05
rs9271252 chr6:32580288 HLA-DQA1 [-15668bp] C - 5 C vs. G 0.358 (C) 0.158 (C) >1 (-) 45 (-) <0.05
rs9275281 chr6:32662920 HLA-DQB1 [+26760bp] C - 12 A vs. G 0.5 (G) 0.425 (G) <1 (-) 0 (-) <0.05
rs6689 chr6:32627700 HLA-DQB1 C - 7 A vs. G 0.192 (G) 0.2 (G) <1 (-) 22 (-) <0.05
rs9271251 chr6:32580241 HLA-DQA1 [-15715bp] C - 5 A vs. C 0.35 (C) 0.183 (C) <1 (-) 43 (-) <0.05
rs9270808 chr6:32569607 HLA-DRB1 [+11982bp] C - 4 C vs. G 0.367 (G) 0.208 (G) <1 (-) 37 (-) <0.05
rs9270809 chr6:32569608 HLA-DRB1 [+11983bp] C - 4 A vs. G 0.367 (G) 0.2 (G) <1 (-) 37 (-) <0.05
rs9275199 chr6:32656680 HLA-DQB1 [+20520bp] C - 10 T vs. C 0.3 (T) 0.342 (C) <1 (-) 35 (-) <0.05
rs9270889 chr6:32571820 HLA-DRB1 [+14195bp] C - 4 T vs. C - - >1 (-) 55 (-) <0.05
rs9273355 chr6:32625960 HLA-DQB1 [-1284bp] C - 3 A vs. G - - >1 (-) 47 (-) <0.05
rs9270906 chr6:32572079 HLA-DRB1 [+14454bp] C - 4 T vs. C 0.408 (T) 0.208 (T) >1 (-) 58 (-) <0.05
rs9270907 chr6:32572082 HLA-DRB1 [+14457bp] C - 4 T vs. C 0.392 (C) 0.183 (C) <1 (-) 58 (-) <0.05
rs3129784 chr6:32656608 HLA-DQB1 [+20448bp] C - 10 T vs. G 0.383 (T) - <1 (-) 40 (-) <0.05
rs2647012 chr6:32664458 HLA-DQB1 [+28298bp] C - 11 T vs. C 0.417 (T) 0.233 (T) >1 (-) 41 (-) <0.05
rs9273354 chr6:32625952 HLA-DQB1 [-1292bp] C - 3 C vs. G - - >1 (-) 46 (-) <0.05
rs9271119 chr6:32576809 HLA-DQA1 [-19147bp] C - 4 A vs. G - - <1 (-) 49 (-) <0.05
rs9271118 chr6:32576796 HLA-DQA1 [-19160bp] C - 4 A vs. G 0.408 (A) 0.233 (A) >1 (-) 48 (-) <0.05
rs2647000 chr6:32656890 HLA-DQB1 [+20730bp] C - 10 T vs. C 0.425 (C) 0.3 (T) >1 (-) 41 (-) <0.05
rs2858319 chr6:32661294 HLA-DQB1 [+25134bp] C - 12 T vs. C 0.433 (T) 0.25 (T) >1 (-) 37 (-) <0.05
rs35142753 chr6:32590183 HLA-DQA1 [-5773bp] C - 8 T vs. G 0.183 (T) 0.133 (T) >1 (-) 43 (-) <0.05
rs2856679 chr6:32655615 HLA-DQB1 [+19455bp] C - 10 A vs. C 0.417 (A) 0.242 (C) <1 (-) 41 (-) <0.05
rs34810547 chr6:32590184 HLA-DQA1 [-5772bp] C - 8 T vs. C 0.183 (T) 0.133 (T) >1 (-) 43 (-) <0.05
rs3135004 chr6:32586420 HLA-DQA1 [-9536bp] C - 11 A vs. G - - >1 (-) 47 (-) <0.05
rs1063355 chr6:32627714 HLA-DQB1 C - 7 T vs. G 0.475 (T) 0.417 (T) >1 (-) 29 (-) <0.05
rs9273426 chr6:32627434 HLA-DQB1 C - 7 A vs. C - - >1 (-) 34 (-) <0.05
rs4636067 chr6:32578621 HLA-DQA1 [-17335bp] C - 5 T vs. G 0.142 (T) 0.025 (T) <1 (-) 0 (-) <0.05
rs17211356 chr6:32578426 HLA-DQA1 [-17530bp] C - 5 A vs. G 0.15 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs112123216 chr6:32591953 HLA-DQA1 [-4003bp] C - 8 T vs. C 0.2 (C) 0.108 (C) <1 (-) 42 (-) <0.05
rs9275285 chr6:32663080 HLA-DQB1 [+26920bp] C - 12 A vs. G 0.475 (G) 0.417 (A) >1 (-) 28 (-) <0.05
rs9275264 chr6:32662372 HLA-DQB1 [+26212bp] C - 12 A vs. G - - >1 (-) 31 (-) <0.05
rs9271221 chr6:32579363 HLA-DQA1 [-16593bp] C - 5 T vs. G 0.442 (G) - <1 (-) 46 (-) <0.05
rs17205002 chr6:32578346 HLA-DQA1 [-17610bp] C - 5 A vs. G 0.15 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs9271226 chr6:32579451 HLA-DQA1 [-16505bp] C - 5 T vs. G 0.5 (G) - <1 (-) 47 (-) <0.05
rs9273430 chr6:32627460 HLA-DQB1 C - 7 T vs. G - - >1 (-) 34 (-) <0.05
rs9273444 chr6:32627635 HLA-DQB1 C - 7 T vs. G - - >1 (-) 31 (-) <0.05
rs9273445 chr6:32627646 HLA-DQB1 C - 7 A vs. G - - >1 (-) 31 (-) <0.05
rs6457620 chr6:32663999 HLA-DQB1 [+27839bp] C - 12 C vs. G 0.492 (G) 0.45 (G) <1 (-) 10 (-) <0.05
rs9275110 chr6:32649723 HLA-DQB1 [+13563bp] C - 6 T vs. C 0.267 (C) 0.383 (C) >1 (-) 0 (-) <0.05
rs9275111 chr6:32649735 HLA-DQB1 [+13575bp] C - 6 T vs. G 0.258 (T) 0.425 (T) <1 (-) 0 (-) <0.05
rs9271225 chr6:32579420 HLA-DQA1 [-16536bp] C - 5 A vs. C - - <1 (-) 46 (-) <0.05
rs9270947 chr6:32572961 HLA-DRB1 [+15336bp] C - 4 C vs. G 0.408 (G) 0.225 (G) <1 (-) 61 (-) <0.05
rs9270946 chr6:32572952 HLA-DRB1 [+15327bp] C - 4 A vs. G 0.4 (G) 0.233 (G) <1 (-) 61 (-) <0.05
rs36206058 chr6:32626920 HLA-DQB1 [-324bp] C - 3 C vs. G - - >1 (-) 47 (-) <0.05
rs9273382 chr6:32626925 HLA-DQB1 [-319bp] C - 3 A vs. G 0.475 (G) 0.475 (A) >1 (-) 47 (-) <0.05
rs9275288 chr6:32663203 HLA-DQB1 [+27043bp] C - 12 A vs. G 0.492 (G) 0.417 (A) >1 (-) 21 (-) <0.05
rs9270927 chr6:32572451 HLA-DRB1 [+14826bp] C - 4 A vs. G 0.375 (A) 0.192 (A) >1 (-) 60 (-) <0.05
rs2858324 chr6:32660375 HLA-DQB1 [+24215bp] C - 12 A vs. G 0.417 (A) 0.233 (A) >1 (-) 38 (-) <0.05

Association studies for this region [+]