Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (IPDGC-deCODE) C UKPDSBB CL 604 (48%) 4916 (57%) 62 (12) - - - 80 (8) - 9,406

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2280972 chr2:32377961 SPAST T vs. C All: C 15 108,990 0.2 (T) 0.367 (T) 0.93 (0.89-0.96) 0 (0-52) 9.14e-05
rs34197800 chr2:32389646 SLC30A6 [-1287bp] A vs. C All: C 15 108,990 0.217 (A) 0.483 (A) 0.93 (0.90-0.96) 0 (0-43) 3.22e-05
rs13013695 chr2:32391231 SLC30A6 A vs. G All: C 15 108,990 0.175 (A) 0.475 (A) 0.93 (0.89-0.96) 0 (0-46) 4.32e-05
rs35978916 chr2:32400635 SLC30A6 C vs. T All: C 15 108,990 0.225 (C) 0.425 (C) 0.93 (0.89-0.96) 0 (0-44) 4.44e-05
rs212742 chr2:32408629 SLC30A6 C vs. T All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-38) 1.61e-05
rs375050 chr2:32413765 SLC30A6 C vs. T All: C 15 108,990 0.217 (C) 0.425 (C) 0.93 (0.89-0.96) 0 (0-48) 2.36e-05
rs212747 chr2:32414704 SLC30A6 A vs. G All: C 15 108,990 0.258 (A) 0.433 (A) 0.93 (0.89-0.96) 0 (0-49) 2.07e-05
rs212754 chr2:32421628 SLC30A6 A vs. G All: C 15 108,990 0.225 (A) 0.433 (A) 0.93 (0.89-0.96) 0 (0-47) 1.77e-05
rs212761 chr2:32429288 SLC30A6 T vs. C All: C 15 108,990 0.225 (T) 0.458 (T) 0.94 (0.90-0.97) 21 (0-57) 5.16e-04
rs212691 chr2:32438075 SLC30A6 G vs. A All: C 15 108,990 0.192 (G) 0.35 (G) 0.94 (0.91-0.98) 33 (0-64) 9.94e-04
rs462878 chr2:32438655 SLC30A6 A vs. G All: C 15 108,990 0.208 (A) 0.342 (A) 0.94 (0.91-0.97) 33 (0-64) 7.30e-04
rs212696 chr2:32441685 SLC30A6 A vs. G All: C 14 102,085 0.217 (A) 0.383 (A) 0.92 (0.89-0.96) 16 (0-54) 6.95e-05
rs212710 chr2:32455578 NLRC4 T vs. C All: C 15 108,990 - 0.417 (C) 1.08 (1.04-1.12) 3 (0-55) 9.09e-05
rs212736 chr2:32473126 NLRC4 T vs. C All: C 15 108,990 0.192 (T) 0.392 (T) 0.93 (0.89-0.96) 15 (0-53) 5.82e-05
rs410469 chr2:32476992 NLRC4 T vs. G All: C 15 108,990 0.208 (T) 0.483 (T) 0.93 (0.89-0.96) 8 (0-44) 4.76e-05
rs7562653 chr2:32478629 NLRC4 T vs. C All: C 15 108,990 0.208 (T) 0.475 (T) 0.93 (0.89-0.96) 7 (0-43) 4.73e-05
rs686005 chr2:32493210 NLRC4 [+2287bp] T vs. C All: C 15 108,990 0.225 (T) 0.458 (C) 0.93 (0.89-0.96) 0 (0-44) 6.78e-05
rs449348 chr2:32499150 YIPF4 [-3829bp] A vs. G All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-38) 2.24e-05
rs805830 chr2:32501475 YIPF4 [-1504bp] T vs. C All: C 15 108,990 0.308 (T) 0.425 (C) 0.93 (0.90-0.96) 0 (0-53) 3.94e-05
rs387780 chr2:32502495 YIPF4 [-484bp] T vs. C All: C 14 107,386 0.283 (T) 0.442 (C) 0.93 (0.90-0.96) 0 (0-43) 1.68e-05
rs398290 chr2:32503526 YIPF4 T vs. C All: C 15 108,990 0.292 (T) 0.442 (C) 0.93 (0.90-0.96) 0 (0-30) 7.23e-06
rs4952255 chr2:32507792 YIPF4 C vs. T All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-38) 1.26e-05
rs390480 chr2:32510072 YIPF4 G vs. T All: C 15 108,990 0.3 (G) 0.375 (T) 0.93 (0.90-0.96) 0 (0-43) 1.35e-05
rs458628 chr2:32515398 YIPF4 G vs. A All: C 15 108,990 0.333 (G) 0.433 (A) 0.93 (0.90-0.96) 0 (0-38) 1.52e-05
rs455737 chr2:32528234 YIPF4 A vs. G All: C 15 108,990 0.292 (A) 0.417 (G) 0.93 (0.90-0.96) 0 (0-52) 3.54e-05
rs1153122 chr2:32533457 YIPF4 C vs. T All: C 15 108,990 - - 1.07 (1.04-1.11) 0 (0-52) 5.77e-05
rs427177 chr2:32537827 YIPF4 T vs. C All: C 15 108,990 - - 1.07 (1.04-1.11) 29 (0-62) 3.76e-05
rs35837551 chr2:32545499 YIPF4 [+3836bp] G vs. A All: C 15 108,990 - - 1.07 (1.04-1.11) 21 (0-57) 6.08e-05
rs6755811 chr2:32549230 YIPF4 [+7567bp] C vs. T All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-48) 2.23e-05
rs75591480 chr2:32552611 YIPF4 [+10948bp] A vs. G All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-48) 1.26e-05
rs10172308 chr2:32555760 YIPF4 [+14097bp] A vs. G All: C 15 108,990 0.292 (A) 0.417 (G) 0.93 (0.90-0.96) 0 (0-47) 1.50e-05
rs7582322 chr2:32565001 BIRC6 [-17095bp] T vs. C All: C 15 108,990 - - 1.09 (1.05-1.13) 0 (0-45) 1.06e-05
rs12712327 chr2:32579219 BIRC6 [-2877bp] C vs. T All: C 15 108,990 - - 1.07 (1.04-1.11) 8 (0-46) 8.25e-05
rs12612824 chr2:32579759 BIRC6 [-2337bp] T vs. C All: C 15 108,990 0.275 (T) 0.433 (C) 0.93 (0.90-0.97) 9 (0-46) 8.22e-05
rs4952262 chr2:32597234 BIRC6 A vs. G All: C 15 108,990 0.45 (A) 0.392 (G) 0.94 (0.91-0.97) 36 (0-65) 8.04e-05
rs1991626 chr2:32602450 BIRC6 A vs. G All: C 15 108,990 0.442 (A) 0.358 (G) 0.94 (0.91-0.97) 37 (0-66) 1.73e-04
rs762025 chr2:32603805 BIRC6 G vs. A All: C 15 108,990 - - 1.08 (1.04-1.11) 0 (0-51) 3.85e-05
rs4019431 chr2:32615493 BIRC6 C vs. A All: C 15 108,990 - - 1.08 (1.04-1.12) 12 (0-50) 2.30e-05
rs3769600 chr2:32616879 BIRC6 A vs. G All: C 15 108,990 0.342 (A) 0.433 (G) 0.93 (0.90-0.96) 42 (0-68) 2.62e-05
rs10172510 chr2:32620888 BIRC6 A vs. G All: C 15 108,990 0.342 (A) 0.433 (G) 0.93 (0.90-0.96) 43 (0-69) 2.63e-05
rs116617324 chr2:32622709 BIRC6 T vs. C All: C 15 108,990 0.333 (T) - 0.93 (0.90-0.96) 43 (0-69) 1.91e-05
rs176403 chr2:32637864 BIRC6 A vs. C All: C 15 108,990 0.275 (A) 0.442 (C) 0.93 (0.90-0.96) 0 (0-46) 2.17e-05
rs176404 chr2:32638846 BIRC6 C vs. T All: C 15 108,990 0.392 (C) 0.375 (T) 0.94 (0.91-0.97) 48 (5-71) 5.62e-05
rs176411 chr2:32643528 BIRC6 T vs. C All: C 15 108,990 0.392 (T) 0.358 (C) 0.94 (0.91-0.97) 45 (0-70) 3.60e-05
rs176415 chr2:32649778 BIRC6 A vs. G All: C 15 108,990 0.283 (A) 0.45 (G) 0.93 (0.90-0.96) 0 (0-49) 2.11e-05
rs13409142 chr2:32666137 BIRC6 C vs. T All: C 15 108,990 0.308 (C) 0.442 (T) 0.93 (0.90-0.96) 0 (0-40) 3.34e-05
rs12470580 chr2:32677941 BIRC6 C vs. A All: C 15 108,990 0.458 (C) 0.383 (C) 1.07 (1.04-1.11) 36 (0-65) 6.98e-05
rs10182170 chr2:32704186 BIRC6 G vs. A All: C 15 108,990 0.333 (G) 0.425 (A) 0.93 (0.90-0.96) 2 (0-54) 1.66e-05
rs6543658 chr2:32718849 BIRC6 G vs. A All: C 15 108,990 0.3 (G) 0.433 (A) 0.93 (0.90-0.97) 0 (0-53) 4.62e-05
rs17428810 chr2:32736043 BIRC6 C vs. T All: C 15 108,990 0.267 (C) 0.425 (T) 0.93 (0.90-0.97) 19 (0-56) 8.23e-05