SMC6, chr2:17845079-17981509 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9268996 chr2:17874650 SMC6 All: C 45,262 5 C vs. T - - 1.14 (1.06-1.23) 0 (-) 4.85e-04
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs13021935 chr2:18000929 MSGN1 [+2561bp] C - 13 T vs. C 0.058 (T) 0.0 (T) >1 (-) 0 (-) <0.05
rs73220846 chr2:18025441 MSGN1 [+27073bp] C - 13 A vs. G 0.075 (A) - >1 (-) 0 (-) <0.05
rs13034338 chr2:17994986 MSGN1 [-2777bp] C - 13 A vs. G 0.05 (G) 0.0 (G) <1 (-) 0 (-) >0.05
rs144942069 chr2:17959751 SMC6 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2555070 chr2:17973512 SMC6 C - 13 T vs. G 0.425 (T) - >1 (-) 0 (-) >0.05
rs6756366 chr2:17823867 VSNL1 C - 13 A vs. G 0.375 (A) - >1 (-) 0 (-) >0.05
rs116311127 chr2:17809485 VSNL1 C - 7 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs300178 chr2:17954647 SMC6 C - 13 T vs. G 0.383 (T) - >1 (-) 0 (-) >0.05
rs112779763 chr2:18001477 MSGN1 [+3109bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs13001625 chr2:17998331 MSGN1 C - 13 T vs. C 0.442 (T) - >1 (-) 0 (-) >0.05
rs17315876 chr2:17997242 MSGN1 [-521bp] C - 13 A vs. G 0.433 (A) - >1 (-) 0 (-) >0.05
rs62130916 chr2:17995066 MSGN1 [-2697bp] C - 13 C vs. G 0.075 (G) - >1 (-) 28 (-) >0.05
rs62130915 chr2:17995017 MSGN1 [-2746bp] C - 13 A vs. G 0.075 (A) - <1 (-) 28 (-) >0.05
rs79940416 chr2:17994902 MSGN1 [-2861bp] C - 13 T vs. G 0.067 (T) - <1 (-) 27 (-) >0.05
rs6718900 chr2:18004110 MSGN1 [+5742bp] C - 13 A vs. G 0.383 (A) 0.008 (A) <1 (-) 0 (-) >0.05
rs7561505 chr2:17934162 SMC6 C - 13 T vs. C 0.383 (C) - <1 (-) 0 (-) >0.05
rs75293938 chr2:17914807 SMC6 C - 12 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs214034 chr2:17988658 SMC6 [+7149bp] C - 13 A vs. C 0.358 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs76622814 chr2:18030427 KCNS3 [-28687bp] C - 11 C vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs188505 chr2:17983100 SMC6 [+1591bp] C - 13 T vs. G 0.375 (G) - <1 (-) 0 (-) >0.05
rs111964567 chr2:17981072 SMC6 C - 13 T vs. G - 0.05 (T) <1 (-) 0 (-) >0.05
rs73921009 chr2:17808551 VSNL1 C - 13 T vs. C 0.317 (T) - >1 (-) 4 (-) >0.05
rs300162 chr2:17981360 SMC6 C - 13 A vs. G 0.383 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs300161 chr2:17981399 SMC6 C - 13 A vs. G 0.383 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs7581024 chr2:17882086 SMC6 C - 13 A vs. G 0.333 (A) - >1 (-) 0 (-) >0.05
rs114214175 chr2:17870726 SMC6 C - 7 A vs. G - - <1 (-) 0 (-) >0.05
rs2710687 chr2:17821056 VSNL1 C - 13 A vs. T 0.367 (T) - <1 (-) 0 (-) >0.05
rs60403576 chr2:17810822 VSNL1 C - 13 T vs. C 0.317 (C) - <1 (-) 2 (-) >0.05
rs147197706 chr2:17979957 SMC6 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs300164 chr2:17981308 SMC6 C - 13 T vs. G 0.383 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs35858730 chr2:17998095 MSGN1 C - 13 T vs. C 0.442 (C) - <1 (-) 0 (-) >0.05
rs2710667 chr2:17837741 VSNL1 C - 13 T vs. C 0.333 (T) - >1 (-) 0 (-) >0.05
rs2555072 chr2:17941423 SMC6 C - 13 T vs. G 0.383 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs300158 chr2:17982283 SMC6 [+774bp] C - 13 A vs. G 0.383 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs148781334 chr2:17962924 SMC6 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs34069439 chr2:17998025 MSGN1 C - 13 A vs. T 0.433 (A) - >1 (-) 0 (-) >0.05
rs2555101 chr2:17835095 VSNL1 C - 13 A vs. T 0.333 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs7572870 chr2:17877105 SMC6 C - 13 T vs. C 0.333 (C) - <1 (-) 0 (-) >0.05
rs11677051 chr2:17802184 VSNL1 C - 13 A vs. G 0.317 (A) - >1 (-) 10 (-) >0.05
rs73921010 chr2:17810528 VSNL1 C - 13 A vs. C 0.317 (C) 0.05 (C) <1 (-) 8 (-) >0.05
rs2710659 chr2:17859138 SMC6 C - 13 T vs. C 0.325 (C) - <1 (-) 0 (-) >0.05
rs146793363 chr2:17949235 SMC6 C - 7 A vs. T - - <1 (-) 0 (-) >0.05
rs2555102 chr2:17835259 VSNL1 C - 13 A vs. G 0.333 (G) - <1 (-) 0 (-) >0.05
rs2555107 chr2:17846162 SMC6 C - 13 A vs. G 0.333 (G) - <1 (-) 0 (-) >0.05
rs2710661 chr2:17862966 SMC6 C - 13 A vs. G 0.333 (A) - >1 (-) 0 (-) >0.05
rs12468583 chr2:18005523 MSGN1 [+7155bp] C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs2555074 chr2:17859655 SMC6 C - 13 T vs. C 0.333 (T) - >1 (-) 0 (-) >0.05
rs2710668 chr2:17837992 VSNL1 C - 13 A vs. G 0.342 (G) - <1 (-) 0 (-) >0.05
rs10166632 chr2:17904337 SMC6 C - 13 A vs. C 0.333 (C) - <1 (-) 0 (-) >0.05
rs2710657 chr2:17857230 SMC6 C - 13 T vs. C 0.333 (T) - >1 (-) 0 (-) >0.05

Association studies for this region [+]