Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (CHARGE-FHS) C UKPDSBB PO 60 (42%) 3889 (55%) 76 (11) - - - 64 (12) - 9,223

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs139785655 chr1:7095359 CAMTA1 C vs. T All: C 15 108,990 - - 0.82 (0.74-0.90) 0 (0-17) 7.89e-05
rs77979322 chr1:7101665 CAMTA1 C vs. T All: C 15 108,990 0.05 (C) 0.033 (C) 1.23 (1.10-1.37) 0 (0-11) 2.00e-04
rs2235515 chr1:14141344 PRDM2 T vs. C All: C 15 108,990 0.242 (T) 0.425 (T) 0.93 (0.90-0.96) 0 (0-33) 8.75e-05
rs6658233 chr1:14144913 PRDM2 T vs. C All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-33) 3.37e-05
rs2235512 chr1:14147514 PRDM2 C vs. T All: C 15 108,990 0.267 (C) 0.417 (C) 0.92 (0.89-0.96) 0 (0-38) 1.97e-05
rs2697971 chr1:14148441 PRDM2 T vs. G All: C 15 108,990 0.225 (T) 0.375 (T) 0.92 (0.89-0.96) 0 (0-46) 3.23e-05
rs2744685 chr1:14148790 PRDM2 T vs. C All: C 15 108,990 0.225 (T) 0.375 (T) 0.92 (0.89-0.96) 0 (0-47) 3.62e-05
rs2744684 chr1:14149179 PRDM2 G vs. A All: C 15 108,990 0.242 (G) - 0.92 (0.88-0.96) 0 (0-51) 2.18e-05
rs157231 chr1:29228618 EPB41 A vs. G All: C 15 108,990 0.05 (A) - 0.89 (0.83-0.95) 0 (0-44) 2.19e-04
rs203286 chr1:29231300 EPB41 T vs. C All: C 15 108,990 - - 1.16 (1.08-1.24) 0 (0-37) 6.02e-05
rs2166884 chr1:30288207 intergenic A vs. G All: C 15 108,990 0.358 (A) 0.125 (A) 0.93 (0.90-0.96) 0 (0-48) 3.79e-05
rs56091902 chr1:30300886 intergenic G vs. A All: C 15 108,990 0.375 (G) 0.092 (G) 0.92 (0.89-0.96) 0 (0-44) 1.22e-05
rs77652000 chr1:30303863 intergenic T vs. C All: C 15 108,990 0.367 (T) 0.083 (T) 0.93 (0.90-0.96) 0 (0-46) 4.28e-05
rs2377161 chr1:30320043 intergenic G vs. A All: C 15 108,990 0.317 (G) 0.375 (G) 0.93 (0.89-0.96) 0 (0-32) 9.71e-06
rs10914535 chr1:30320055 intergenic G vs. T All: C 15 108,990 0.317 (G) 0.133 (G) 0.92 (0.89-0.96) 0 (0-34) 5.60e-06
rs7512834 chr1:30322046 intergenic C vs. T All: C 15 108,990 0.317 (C) 0.375 (C) 0.92 (0.89-0.96) 0 (0-34) 6.96e-06
rs10914538 chr1:30322404 intergenic A vs. G All: C 15 108,990 0.333 (A) 0.133 (A) 0.92 (0.89-0.96) 0 (0-33) 7.05e-06
rs45439195 chr1:31439860 PUM1 A vs. G All: C 14 103,470 0.075 (A) - 1.27 (1.14-1.42) 5 (0-57) 2.29e-05
rs11589915 chr1:31441980 PUM1 G vs. A All: C 14 103,470 - - 0.79 (0.70-0.88) 0 (0-54) 3.41e-05
rs2906770 chr1:53471432 SCP2 C vs. A All: C 15 108,990 - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
rs1181191 chr1:54224270 NDC1 [-6863bp] C vs. A All: C 14 103,235 - - 0.85 (0.78-0.91) 0 (0-17) 2.27e-05
rs72660702 chr1:54230086 NDC1 [-1047bp] A vs. G All: C 15 108,990 0.075 (A) 0.033 (A) 1.12 (1.06-1.19) 0 (0-4) 1.01e-04
rs17536223 chr1:54234580 NDC1 A vs. C All: C 15 108,990 0.075 (A) 0.058 (A) 1.11 (1.05-1.17) 0 (0-4) 9.98e-05
rs4927036 chr1:54248518 NDC1 G vs. A All: C 15 108,990 0.075 (G) 0.058 (G) 1.10 (1.05-1.15) 0 (0-2) 1.12e-04
rs57861597 chr1:54256324 NDC1 G vs. A All: C 15 108,990 - - 0.92 (0.88-0.96) 0 (-) 1.04e-04
rs4927038 chr1:54256713 NDC1 T vs. C All: C 15 108,990 0.075 (T) 0.058 (T) 1.09 (1.04-1.14) 0 (-) 9.60e-05
rs2273139 chr1:54258880 NDC1 T vs. C All: C 15 108,990 0.075 (T) 0.067 (T) 1.09 (1.04-1.14) 0 (-) 9.26e-05
rs35460961 chr1:54260903 NDC1 C vs. T All: C 15 108,990 0.125 (C) 0.058 (C) 1.08 (1.04-1.12) 0 (0-46) 1.00e-04
rs56193555 chr1:54261043 NDC1 T vs. C All: C 15 108,990 0.075 (T) 0.067 (T) 1.10 (1.05-1.15) 0 (-) 6.71e-05
rs9436477 chr1:54262163 NDC1 G vs. A All: C 15 108,990 0.133 (G) 0.067 (G) 1.09 (1.04-1.13) 0 (0-48) 6.18e-05
rs72662319 chr1:54263944 NDC1 G vs. T All: C 15 108,990 0.075 (G) 0.042 (G) 1.09 (1.05-1.14) 0 (-) 7.37e-05
rs1181181 chr1:54263989 NDC1 C vs. T All: C 15 108,990 0.133 (C) 0.067 (C) 1.08 (1.04-1.13) 0 (0-43) 9.03e-05
rs1181180 chr1:54264996 NDC1 C vs. T All: C 15 108,990 0.133 (C) 0.067 (C) 1.08 (1.04-1.12) 0 (0-46) 8.58e-05
rs1181176 chr1:54267199 NDC1 T vs. C All: C 15 108,990 0.133 (T) 0.067 (T) 1.08 (1.04-1.12) 0 (0-46) 8.87e-05
rs1181147 chr1:54269087 NDC1 A vs. G All: C 15 108,990 0.133 (A) 0.067 (A) 1.08 (1.04-1.12) 0 (0-45) 8.79e-05
rs1181153 chr1:54279837 NDC1 C vs. T All: C 15 108,990 - - 0.93 (0.89-0.96) 0 (0-45) 9.10e-05
rs1181152 chr1:54281836 NDC1 A vs. G All: C 15 108,990 - - 0.93 (0.89-0.96) 0 (0-44) 8.24e-05
rs115784208 chr1:54282323 NDC1 C vs. A All: C 15 108,990 0.075 (C) 0.058 (C) 1.09 (1.05-1.14) 0 (0-6) 6.90e-05
rs111578074 chr1:54283836 NDC1 A vs. G All: C 15 108,990 0.067 (A) 0.058 (A) 1.10 (1.05-1.15) 0 (-) 4.33e-05
rs72662323 chr1:54284551 NDC1 C vs. T All: C 15 108,990 0.075 (C) 0.058 (C) 1.09 (1.05-1.14) 0 (0-9) 7.17e-05
rs12089209 chr1:54284814 NDC1 T vs. C All: C 15 108,990 0.133 (T) 0.067 (T) 1.08 (1.04-1.13) 0 (0-42) 8.18e-05
rs4926614 chr1:54285530 NDC1 T vs. G All: C 15 108,990 0.075 (T) 0.058 (T) 1.09 (1.05-1.14) 0 (0-9) 7.38e-05
rs12566280 chr1:54286313 NDC1 G vs. A All: C 15 108,990 0.075 (G) 0.058 (G) 1.09 (1.05-1.14) 0 (0-9) 7.39e-05
rs10489461 chr1:54289020 NDC1 T vs. C All: C 15 108,990 0.058 (T) - 1.11 (1.06-1.16) 0 (0-29) 2.82e-05
rs60684032 chr1:54289826 NDC1 T vs. C All: C 15 108,990 0.075 (T) 0.058 (T) 1.09 (1.05-1.14) 0 (0-10) 7.81e-05
rs1181187 chr1:54290398 NDC1 C vs. T All: C 15 108,990 0.133 (C) 0.067 (C) 1.08 (1.04-1.13) 0 (0-41) 8.28e-05
rs41305860 chr1:54301458 NDC1 T vs. G All: C 15 108,990 0.067 (T) 0.058 (T) 1.10 (1.05-1.16) 0 (0-17) 1.44e-04
rs10205011 chr1:66208666 PDE4B [-49531bp] A vs. G All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-42) 6.22e-05
rs11894203 chr1:67645589 C1orf141 T vs. G All: C 15 108,990 - - 1.15 (1.09-1.22) 0 (0-46) 7.72e-07
rs34281723 chr1:67645601 C1orf141 G vs. T All: C 15 108,990 - - 0.88 (0.83-0.92) 0 (0-45) 1.30e-06