LRRK2, chr12:40590546-40763087 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76904798 chr12:40614434 LRRK2 All: C 120,238 21 T vs. C 0.158 (T) - 1.16 (1.11-1.20) 0 (0-47) 4.86e-14
Meta_image?name=rs76904798

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17444054 chr12:40716434 LRRK2 C - 13 A vs. G - 0.017 (G) <1 (-) 31 (-) <0.05
rs17444028 chr12:40715083 LRRK2 C - 13 A vs. G - - >1 (-) 31 (-) <0.05
rs10878336 chr12:40693225 LRRK2 C - 13 A vs. C 0.067 (C) 0.092 (C) >1 (-) 0 (-) <0.05
rs4768228 chr12:40711447 LRRK2 C - 13 T vs. G 0.017 (T) 0.025 (T) >1 (-) 31 (-) <0.05
rs138053637 chr12:40597279 LRRK2 C - 13 T vs. C - - <1 (-) 27 (-) <0.05
rs60776971 chr12:40728428 LRRK2 C - 13 C vs. G 0.158 (C) - >1 (-) 0 (-) <0.05
rs12314692 chr12:40688921 LRRK2 C - 13 A vs. G 0.058 (G) 0.1 (G) >1 (-) 0 (-) <0.05
rs73108339 chr12:40665920 LRRK2 C - 13 T vs. C 0.05 (T) - <1 (-) 0 (-) <0.05
rs11175963 chr12:40702771 LRRK2 C - 13 T vs. C 0.067 (T) 0.083 (T) <1 (-) 0 (-) <0.05
rs7133914 chr12:40702911 LRRK2 C - 13 A vs. G 0.067 (A) 0.017 (A) <1 (-) 0 (-) <0.05
rs11175964 chr12:40702987 LRRK2 C - 13 A vs. G 0.067 (A) 0.092 (A) <1 (-) 0 (-) <0.05
rs73275761 chr12:40725593 LRRK2 C - 13 C vs. G 0.167 (G) - <1 (-) 7 (-) <0.05
rs73094979 chr12:40795586 MUC19 All: C 108,990 15 C vs. T 0.125 (C) - 0.94 (0.90-0.98) 0 (0-26) 0.005
rs11564172 chr12:40792224 MUC19 All: C 108,990 15 A vs. C 0.125 (A) - 0.94 (0.90-0.98) 0 (0-28) 0.005
rs3747891 chr12:40718883 LRRK2 C - 13 T vs. C - - >1 (-) 0 (-) <0.05
rs1427262 chr12:40798608 MUC19 All: C 108,990 15 C vs. A 0.125 (C) - 0.94 (0.90-0.98) 0 (0-25) 0.005
rs11564263 chr12:40790698 MUC19 C - 13 A vs. G 0.35 (G) 0.242 (G) <1 (-) 24 (-) <0.05
rs17520251 chr12:40725204 LRRK2 C - 13 A vs. T 0.167 (A) - >1 (-) 2 (-) <0.05
rs11176022 chr12:40716474 LRRK2 C - 13 T vs. C 0.058 (C) 0.083 (C) >1 (-) 0 (-) <0.05
rs17520991 chr12:40806115 MUC19 C - 13 A vs. T 0.075 (A) 0.125 (A) <1 (-) 0 (-) <0.05
rs994798 chr12:40808832 MUC19 C - 13 A vs. G 0.408 (G) 0.458 (G) >1 (-) 14 (-) <0.05
rs12426498 chr12:40761315 LRRK2 C - 13 A vs. T 0.075 (T) 0.108 (T) >1 (-) 0 (-) <0.05
rs17484493 chr12:40740873 LRRK2 C - 12 T vs. C - - <1 (-) 25 (-) <0.05
rs11176261 chr12:40766252 LRRK2 [+3165bp] C - 13 T vs. C 0.075 (C) 0.108 (C) >1 (-) 0 (-) <0.05
rs10784595 chr12:40799969 MUC19 C - 13 T vs. C 0.383 (T) 0.45 (T) <1 (-) 29 (-) <0.05
rs10784596 chr12:40799975 MUC19 C - 13 C vs. G 0.375 (C) 0.45 (C) <1 (-) 29 (-) <0.05
rs11176333 chr12:40772807 LRRK2 [+9720bp] C - 13 A vs. G 0.075 (A) 0.1 (A) <1 (-) 0 (-) <0.05
rs73101520 chr12:40801050 MUC19 C - 13 A vs. T 0.067 (T) 0.125 (T) >1 (-) 0 (-) <0.05
rs11176342 chr12:40773875 LRRK2 [+10788bp] C - 13 T vs. C 0.075 (C) - >1 (-) 0 (-) <0.05
rs11176346 chr12:40774168 LRRK2 [+11081bp] C - 13 A vs. G 0.075 (A) 0.092 (A) <1 (-) 0 (-) <0.05
rs11175456 chr12:40567581 LRRK2 [-22965bp] C - 13 A vs. G 0.092 (G) 0.208 (G) <1 (-) 21 (-) <0.05
rs2404835 chr12:40730463 LRRK2 C - 13 T vs. C 0.275 (T) 0.442 (T) <1 (-) 0 (-) <0.05
rs117106797 chr12:40800830 MUC19 C - 13 T vs. C 0.042 (T) - <1 (-) 0 (-) <0.05
rs11564157 chr12:40554097 LRRK2 [-36449bp] C - 13 T vs. C 0.092 (T) 0.208 (T) >1 (-) 14 (-) <0.05
rs11175409 chr12:40558785 LRRK2 [-31761bp] C - 13 A vs. G 0.092 (G) 0.217 (G) <1 (-) 14 (-) <0.05
rs141265619 chr12:40568038 LRRK2 [-22508bp] C - 5 A vs. G - - <1 (-) 10 (-) <0.05
rs7301226 chr12:40563537 LRRK2 [-27009bp] C - 13 C vs. G 0.092 (C) 0.208 (C) >1 (-) 16 (-) <0.05
rs77668961 chr12:40751815 LRRK2 C - 13 T vs. C 0.058 (T) - >1 (-) 0 (-) <0.05
rs7973688 chr12:40564878 LRRK2 [-25668bp] C - 13 C vs. G 0.092 (C) 0.208 (C) >1 (-) 14 (-) <0.05
rs78713787 chr12:40584364 LRRK2 [-6182bp] C - 9 T vs. C - - >1 (-) 0 (-) <0.05
rs142308173 chr12:40774256 LRRK2 [+11169bp] C - 9 T vs. C - - <1 (-) 4 (-) <0.05
rs1820544 chr12:40793993 MUC19 C - 13 T vs. C 0.392 (T) 0.45 (T) <1 (-) 24 (-) <0.05
rs7137809 chr12:40796773 MUC19 C - 13 C vs. G 0.4 (G) 0.45 (G) >1 (-) 24 (-) <0.05
rs7308560 chr12:40796848 MUC19 C - 13 A vs. T 0.4 (T) 0.45 (T) >1 (-) 24 (-) <0.05
rs10784589 chr12:40791214 MUC19 C - 13 T vs. C 0.4 (C) 0.442 (C) >1 (-) 29 (-) <0.05
rs11176495 chr12:40806227 MUC19 C - 13 A vs. G 0.4 (A) 0.433 (A) <1 (-) 23 (-) <0.05
rs12820920 chr12:40688081 LRRK2 C - 13 A vs. G 0.45 (A) 0.325 (G) <1 (-) 33 (-) <0.05
rs12426326 chr12:40747435 LRRK2 C - 13 A vs. G - - >1 (-) 44 (-) <0.05
rs11564269 chr12:40698422 LRRK2 C - 13 T vs. C 0.033 (T) - >1 (-) 0 (-) <0.05
rs2404578 chr12:40577791 LRRK2 [-12755bp] C - 13 A vs. G 0.1 (G) 0.2 (G) <1 (-) 18 (-) <0.05

Association studies for this region [+]