LRRK2, chr12:40590546-40763087 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76904798 chr12:40614434 LRRK2 All: C 120,238 21 T vs. C 0.158 (T) - 1.16 (1.11-1.20) 0 (0-47) 4.86e-14
Meta_image?name=rs76904798

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10459264 chr12:40738008 LRRK2 All: C 108,990 15 T vs. C 0.067 (T) 0.1 (T) 0.88 (0.83-0.94) 19 (0-56) 4.87e-05
rs76664306 chr12:40604939 LRRK2 All: C 108,990 15 A vs. G 0.017 (A) - 1.26 (1.13-1.41) 0 (0-47) 4.90e-05
rs148319899 chr12:40740223 LRRK2 All: C 108,990 15 T vs. C - - 0.81 (0.73-0.90) 44 (0-69) 4.93e-05
rs11564145 chr12:40811665 MUC19 C - 13 C vs. G - - >1 (-) 57 (-) <1.00e-04
rs28365229 chr12:40727145 LRRK2 All: C 108,990 15 C vs. T - - 0.81 (0.73-0.90) 36 (0-65) 5.27e-05
rs17492159 chr12:40808081 MUC19 All: C 108,990 15 A vs. G 0.075 (A) 0.125 (A) 0.88 (0.83-0.94) 20 (0-57) 5.32e-05
rs76317623 chr12:40582577 LRRK2 [-7969bp] All: C 108,990 15 T vs. C 0.017 (T) - 1.29 (1.14-1.46) 0 (0-50) 5.43e-05
rs150082974 chr12:40628232 LRRK2 C - 13 A vs. G - - >1 (-) 0 (-) <1.00e-04
rs77365890 chr12:40568163 LRRK2 [-22383bp] C - 13 C vs. G 0.092 (G) - <1 (-) 0 (-) <1.00e-04
rs78214347 chr12:40542763 SLC2A13 [+42872bp] All: C 108,990 15 G vs. A 0.017 (G) - 1.24 (1.12-1.38) 0 (0-44) 5.92e-05
rs17444570 chr12:40786515 MUC19 [-682bp] C - 13 T vs. C 0.183 (C) - <1 (-) 0 (-) <1.00e-04
rs139408196 chr12:40575173 LRRK2 [-15373bp] All: C 108,990 15 C vs. T - - 1.17 (1.08-1.26) 0 (0-26) 6.17e-05
rs142152735 chr12:40575006 LRRK2 [-15540bp] All: C 108,990 15 G vs. A - - 1.17 (1.08-1.26) 0 (0-26) 6.20e-05
rs58895938 chr12:40769770 LRRK2 [+6683bp] All: C 108,990 15 G vs. A 0.117 (G) - 1.10 (1.05-1.16) 0 (0-13) 6.33e-05
rs10878386 chr12:40725928 LRRK2 All: C 108,990 15 G vs. A 0.075 (G) 0.1 (G) 0.88 (0.83-0.94) 19 (0-56) 6.90e-05
rs11176195 chr12:40756207 LRRK2 All: C 108,990 15 C vs. T 0.075 (C) 0.1 (C) 0.88 (0.83-0.94) 25 (0-60) 7.08e-05
rs11836288 chr12:40753774 LRRK2 All: C 108,990 15 T vs. C 0.058 (T) 0.125 (T) 0.88 (0.83-0.94) 25 (0-59) 7.11e-05
rs112259589 chr12:40750966 LRRK2 All: C 108,990 15 T vs. C 0.075 (T) 0.1 (T) 0.88 (0.83-0.94) 24 (0-59) 7.17e-05
rs11175793 chr12:40662039 LRRK2 All: C 108,990 15 A vs. G 0.058 (A) 0.092 (A) 0.88 (0.83-0.94) 5 (0-56) 7.23e-05
rs4318033 chr12:40680941 LRRK2 All: C 108,990 15 G vs. A 0.05 (G) 0.092 (G) 0.88 (0.82-0.94) 5 (0-56) 7.31e-05
rs3763985 chr12:40565683 LRRK2 [-24863bp] C - 13 C vs. G 0.075 (G) 0.125 (G) >1 (-) 0 (-) <1.00e-04
rs12426513 chr12:40787808 MUC19 All: C 108,990 15 T vs. G 0.075 (T) 0.125 (T) 0.88 (0.83-0.94) 18 (0-55) 7.71e-05
rs10784485 chr12:40670870 LRRK2 All: C 108,990 15 C vs. T 0.042 (C) 0.092 (C) 0.87 (0.81-0.93) 5 (0-56) 8.26e-05
rs3885053 chr12:40789380 MUC19 All: C 108,990 15 T vs. C 0.075 (T) 0.125 (T) 0.88 (0.83-0.94) 18 (0-55) 8.32e-05
rs73101517 chr12:40800267 MUC19 All: C 108,990 15 A vs. G 0.075 (A) 0.1 (A) 0.88 (0.83-0.94) 20 (0-56) 8.66e-05
rs11175941 chr12:40694399 LRRK2 All: C 108,990 15 A vs. G 0.067 (A) 0.108 (A) 0.88 (0.83-0.94) 3 (0-55) 8.70e-05
rs17444202 chr12:40756321 LRRK2 All: C 108,990 15 T vs. C 0.142 (T) - 1.10 (1.05-1.15) 0 (0-15) 9.30e-05
rs28365238 chr12:40786497 MUC19 [-700bp] All: C 108,990 15 A vs. G 0.075 (A) 0.133 (A) 0.88 (0.82-0.94) 9 (0-47) 9.78e-05
rs10784497 chr12:40689982 LRRK2 All: C 108,990 15 C vs. T 0.058 (C) 0.092 (C) 0.88 (0.83-0.94) 11 (0-49) 9.80e-05
rs17444285 chr12:40763652 LRRK2 [+565bp] All: C 108,990 15 T vs. G 0.15 (T) - 1.09 (1.05-1.14) 0 (0-34) 1.15e-04
rs11175913 chr12:40687035 LRRK2 All: C 108,990 15 T vs. C 0.058 (T) 0.092 (T) 0.88 (0.83-0.94) 10 (0-47) 1.25e-04
rs11175902 chr12:40684880 LRRK2 All: C 108,990 15 A vs. C - - 1.13 (1.06-1.21) 9 (0-46) 1.40e-04
rs17466626 chr12:40760631 LRRK2 C - 13 A vs. G 0.017 (G) - <1 (-) 52 (-) <0.05
rs11564212 chr12:40591612 LRRK2 All: C 108,990 15 G vs. T - - 0.82 (0.74-0.91) 3 (0-55) 1.56e-04
rs149596967 chr12:40728626 LRRK2 C - 13 A vs. T - - <1 (-) 37 (-) <0.05
rs17484003 chr12:40587521 LRRK2 [-3025bp] All: C 108,990 15 T vs. C - - 0.82 (0.74-0.91) 2 (0-55) 1.69e-04
rs28365224 chr12:40690944 LRRK2 All: C 108,990 15 A vs. G 0.067 (A) 0.092 (A) 0.89 (0.83-0.94) 17 (0-54) 1.73e-04
rs12426639 chr12:40745777 LRRK2 C - 13 A vs. T - - <1 (-) 49 (-) <0.05
rs11564207 chr12:40664643 LRRK2 C - 13 A vs. T 0.167 (A) - >1 (-) 0 (-) <0.05
rs117544909 chr12:40627456 LRRK2 C - 13 A vs. T 0.017 (T) - <1 (-) 12 (-) <0.05
rs10878299 chr12:40666875 LRRK2 C - 13 C vs. G 0.058 (G) 0.092 (G) >1 (-) 0 (-) <0.05
rs36220738 chr12:40677655 LRRK2 C - 13 T vs. C 0.017 (T) - >1 (-) 37 (-) <0.05
rs147015277 chr12:40678088 LRRK2 C - 13 T vs. C - - <1 (-) 37 (-) <0.05
rs118148378 chr12:40542515 SLC2A13 [+42624bp] C - 13 C vs. G 0.017 (G) - <1 (-) 4 (-) <0.05
rs17458808 chr12:40543545 SLC2A13 [+43654bp] C - 13 A vs. T - - >1 (-) 3 (-) <0.05
rs113535827 chr12:40782092 MUC19 [-5105bp] C - 13 C vs. G 0.117 (G) - <1 (-) 0 (-) <0.05
rs73277591 chr12:40778919 MUC19 [-8278bp] C - 13 C vs. G 0.117 (C) - >1 (-) 0 (-) <0.05
rs141893556 chr12:40789456 MUC19 C - 12 A vs. G - - <1 (-) 44 (-) <0.05
rs17490817 chr12:40656962 LRRK2 C - 13 A vs. T 0.058 (A) 0.083 (A) <1 (-) 0 (-) <0.05
rs17443600 chr12:40658867 LRRK2 C - 13 A vs. T - - <1 (-) 18 (-) <0.05

Association studies for this region [+]