LRRK2, chr12:40590546-40763087 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76904798 chr12:40614434 LRRK2 All: C 120,238 21 T vs. C 0.158 (T) - 1.16 (1.11-1.20) 0 (0-47) 4.86e-14
Meta_image?name=rs76904798

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11564266 chr12:40750195 LRRK2 All: C 108,990 15 A vs. C - - 0.80 (0.72-0.88) 41 (0-68) 1.53e-05
rs17489985 chr12:40541456 SLC2A13 [+41565bp] All: C 108,990 15 T vs. C 0.083 (T) - 1.13 (1.07-1.20) 0 (0-37) 1.54e-05
rs17484541 chr12:40747751 LRRK2 All: C 108,990 15 G vs. A - - 0.80 (0.72-0.88) 41 (0-68) 1.55e-05
rs11564132 chr12:40550174 LRRK2 [-40372bp] All: C 108,990 15 T vs. C 0.1 (T) - 1.13 (1.07-1.19) 0 (0-37) 1.60e-05
rs17444103 chr12:40721159 LRRK2 All: C 108,990 15 C vs. T 0.017 (C) - 1.28 (1.14-1.43) 20 (0-57) 1.62e-05
rs72547977 chr12:40708322 LRRK2 All: C 108,990 15 A vs. G 0.017 (A) - 1.28 (1.14-1.43) 17 (0-54) 1.73e-05
rs17458836 chr12:40545410 LRRK2 [-45136bp] All: C 108,990 15 C vs. A 0.092 (C) - 1.13 (1.07-1.19) 0 (0-35) 1.75e-05
rs2638230 chr12:40604075 LRRK2 All: C 108,990 15 T vs. G 0.317 (T) 0.35 (T) 0.93 (0.90-0.96) 3 (0-55) 1.79e-05
rs79149174 chr12:40547803 LRRK2 [-42743bp] All: C 108,990 15 G vs. A 0.092 (G) 0.008 (G) 1.13 (1.07-1.19) 0 (0-36) 1.79e-05
rs4291738 chr12:40611618 LRRK2 All: C 108,990 15 T vs. G 0.058 (T) 0.133 (T) 0.85 (0.79-0.92) 0 (0-30) 1.80e-05
rs116644875 chr12:40625609 LRRK2 C - 13 A vs. G - - <1 (-) 0 (-) <1.00e-04
rs17443185 chr12:40586107 LRRK2 [-4439bp] All: C 108,990 15 G vs. A - - 0.73 (0.63-0.84) 0 (0-39) 1.89e-05
rs17442812 chr12:40542600 SLC2A13 [+42709bp] All: C 108,990 15 C vs. T 0.092 (C) - 1.13 (1.07-1.19) 0 (0-35) 1.95e-05
rs17458780 chr12:40541443 SLC2A13 [+41552bp] All: C 108,990 15 A vs. G 0.092 (A) - 1.13 (1.07-1.19) 0 (0-35) 1.97e-05
rs11613206 chr12:40609581 LRRK2 All: C 108,990 15 A vs. G 0.058 (A) 0.133 (A) 0.85 (0.79-0.92) 0 (0-30) 2.07e-05
rs117203131 chr12:40645737 LRRK2 All: C 108,990 15 A vs. G 0.017 (A) - 1.27 (1.14-1.42) 0 (0-51) 2.08e-05
rs150645252 chr12:40647956 LRRK2 All: C 108,990 15 G vs. T - - 0.77 (0.68-0.87) 2 (0-55) 2.22e-05
rs117502843 chr12:40644555 LRRK2 All: C 108,990 15 A vs. G 0.017 (A) - 1.27 (1.14-1.42) 0 (0-50) 2.25e-05
rs73277595 chr12:40778979 MUC19 [-8218bp] All: C 108,990 15 A vs. G 0.117 (A) - 1.11 (1.06-1.16) 0 (0-7) 2.27e-05
rs11564173 chr12:40750471 LRRK2 All: C 108,990 15 A vs. G 0.117 (A) - 1.10 (1.05-1.16) 0 (0-30) 2.32e-05
rs73277531 chr12:40750984 LRRK2 All: C 108,990 15 G vs. A 0.117 (G) - 1.10 (1.05-1.16) 0 (0-30) 2.34e-05
rs11175666 chr12:40628433 LRRK2 C - 13 T vs. C - - >1 (-) 0 (-) <1.00e-04
rs79166808 chr12:40567252 LRRK2 [-23294bp] All: C 108,990 15 T vs. C 0.092 (T) - 1.13 (1.07-1.19) 0 (0-21) 2.62e-05
rs2404581 chr12:40639901 LRRK2 All: C 108,990 15 C vs. T 0.383 (C) - 0.93 (0.90-0.96) 0 (0-44) 2.66e-05
rs17444515 chr12:40783688 MUC19 [-3509bp] All: C 108,990 15 A vs. G 0.108 (A) - 1.11 (1.06-1.17) 0 (0-3) 2.69e-05
rs73277533 chr12:40751527 LRRK2 All: C 108,990 15 A vs. G 0.125 (A) - 1.10 (1.05-1.15) 0 (0-29) 2.77e-05
rs76826991 chr12:40605526 LRRK2 C - 13 T vs. C 0.092 (T) - >1 (-) 0 (-) <1.00e-04
rs17519419 chr12:40606702 LRRK2 All: C 108,990 15 T vs. C 0.05 (T) 0.142 (T) 0.86 (0.80-0.92) 0 (0-31) 2.85e-05
rs17466969 chr12:40786828 MUC19 [-369bp] C - 13 A vs. T 0.017 (T) - <1 (-) 56 (-) <1.00e-04
rs75143074 chr12:40623324 LRRK2 All: C 108,990 15 C vs. A 0.017 (C) - 1.27 (1.14-1.42) 0 (0-46) 2.90e-05
rs117297508 chr12:40629747 LRRK2 All: C 108,990 15 T vs. C 0.017 (T) - 1.24 (1.12-1.37) 0 (0-32) 3.32e-05
rs141037287 chr12:40788647 MUC19 C - 13 C vs. G - - >1 (-) 55 (-) <1.00e-04
rs17443656 chr12:40666737 LRRK2 All: C 108,990 15 G vs. A - 0.025 (A) 0.81 (0.73-0.89) 0 (0-52) 3.54e-05
rs2098965 chr12:40780721 MUC19 [-6476bp] All: C 108,990 15 A vs. G 0.117 (A) - 1.11 (1.06-1.16) 0 (0-14) 3.55e-05
rs117408408 chr12:40611670 LRRK2 All: C 108,990 15 G vs. A 0.017 (G) - 1.32 (1.16-1.50) 0 (0-42) 3.61e-05
rs17520775 chr12:40773020 LRRK2 [+9933bp] All: C 108,990 15 T vs. C 0.117 (T) - 1.11 (1.06-1.16) 0 (0-15) 3.62e-05
rs11564259 chr12:40792197 MUC19 C - 13 C vs. G - - >1 (-) 56 (-) <1.00e-04
rs117528165 chr12:40614062 LRRK2 All: C 108,990 15 T vs. C 0.017 (T) - 1.27 (1.13-1.41) 0 (0-37) 3.67e-05
rs76906269 chr12:40607709 LRRK2 All: C 108,990 15 G vs. A 0.017 (G) - 1.27 (1.13-1.42) 0 (0-44) 3.68e-05
rs146687709 chr12:40797511 MUC19 C - 13 A vs. T - - >1 (-) 56 (-) <1.00e-04
rs117021749 chr12:40809190 MUC19 C - 13 C vs. G 0.017 (C) - >1 (-) 56 (-) <1.00e-04
rs7485401 chr12:40812207 MUC19 C - 13 A vs. T 0.017 (A) - >1 (-) 56 (-) <1.00e-04
rs17466339 chr12:40712359 LRRK2 All: C 108,990 15 T vs. C 0.175 (T) - 1.09 (1.05-1.14) 10 (0-48) 3.89e-05
rs5015149 chr12:40812494 MUC19 C - 13 A vs. T 0.017 (T) - <1 (-) 56 (-) <1.00e-04
rs66737902 chr12:40761663 LRRK2 All: C 108,990 15 C vs. T 0.15 (C) - 1.10 (1.05-1.15) 0 (0-38) 4.09e-05
rs12422278 chr12:40763013 LRRK2 C - 13 A vs. T - - >1 (-) 49 (-) <1.00e-04
rs148547517 chr12:40640339 LRRK2 All: C 108,990 15 A vs. G - - 0.79 (0.71-0.89) 6 (0-57) 4.17e-05
rs4113954 chr12:40767997 LRRK2 [+4910bp] All: C 108,990 15 A vs. G 0.108 (A) - 1.11 (1.05-1.16) 0 (0-13) 4.41e-05
rs140578439 chr12:40810824 MUC19 C - 13 C vs. G - - >1 (-) 52 (-) <1.00e-04
rs74324737 chr12:40625081 LRRK2 C - 13 A vs. G 0.125 (A) - >1 (-) 0 (-) <1.00e-04

Association studies for this region [+]