HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2856678 chr6:32655830 HLA-DQB1 [+19670bp] C - 10 A vs. T 0.275 (A) 0.375 (A) <1 (-) 0 (-) <0.05
rs9275218 chr6:32658933 HLA-DQB1 [+22773bp] C - 12 C vs. G 0.358 (G) 0.458 (G) >1 (-) 0 (-) <0.05
rs9271413 chr6:32587768 HLA-DQA1 [-8188bp] C - 11 A vs. G 0.2 (G) 0.15 (G) <1 (-) 59 (-) <0.05
rs4530903 chr6:32581889 HLA-DQA1 [-14067bp] C - 5 T vs. C 0.15 (T) - <1 (-) 0 (-) <0.05
rs4504507 chr6:32582288 HLA-DQA1 [-13668bp] C - 5 T vs. C 0.142 (T) 0.025 (T) <1 (-) 0 (-) <0.05
rs56838463 chr6:32581225 HLA-DQA1 [-14731bp] C - 5 A vs. C 0.142 (C) - >1 (-) 0 (-) <0.05
rs34471348 chr6:32581175 HLA-DQA1 [-14781bp] C - 5 T vs. C 0.142 (C) 0.025 (C) >1 (-) 0 (-) <0.05
rs55873471 chr6:32581712 HLA-DQA1 [-14244bp] C - 5 A vs. G 0.142 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs35421715 chr6:32581456 HLA-DQA1 [-14500bp] C - 5 A vs. G 0.142 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs4404800 chr6:32581913 HLA-DQA1 [-14043bp] C - 5 A vs. G 0.142 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs9271211 chr6:32579078 HLA-DQA1 [-16878bp] C - 5 T vs. C - - <1 (-) 20 (-) <0.05
rs9271212 chr6:32579079 HLA-DQA1 [-16877bp] C - 5 A vs. G - - >1 (-) 20 (-) <0.05
rs9271493 chr6:32589158 HLA-DQA1 [-6798bp] C - 4 A vs. G 0.492 (A) 0.408 (A) >1 (-) 0 (-) <0.05
rs9271210 chr6:32579070 HLA-DQA1 [-16886bp] C - 5 T vs. C - - <1 (-) 22 (-) <0.05
rs9271213 chr6:32579211 HLA-DQA1 [-16745bp] C - 5 C vs. G 0.367 (G) 0.183 (G) <1 (-) 23 (-) <0.05
rs113195871 chr6:32580640 HLA-DQA1 [-15316bp] C - 5 A vs. T 0.133 (A) - <1 (-) 0 (-) <0.05
rs2858330 chr6:32658715 HLA-DQB1 [+22555bp] C - 12 T vs. C 0.425 (C) - >1 (-) 32 (-) <0.05
rs7754464 chr6:32657818 HLA-DQB1 [+21658bp] C - 12 A vs. G 0.442 (G) 0.267 (A) >1 (-) 28 (-) <0.05
rs9275289 chr6:32663208 HLA-DQB1 [+27048bp] C - 12 A vs. C 0.342 (C) 0.492 (A) >1 (-) 0 (-) <0.05
rs72850069 chr6:32580454 HLA-DQA1 [-15502bp] C - 5 T vs. G 0.133 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs5000634 chr6:32663564 HLA-DQB1 [+27404bp] C - 12 A vs. G 0.375 (G) 0.475 (A) >1 (-) 0 (-) <0.05
rs6457619 chr6:32663986 HLA-DQB1 [+27826bp] C - 12 C vs. G 0.383 (G) 0.483 (C) >1 (-) 0 (-) <0.05
rs4642516 chr6:32657543 HLA-DQB1 [+21383bp] C - 12 T vs. G 0.433 (T) 0.267 (G) <1 (-) 31 (-) <0.05
rs9275274 chr6:32662566 HLA-DQB1 [+26406bp] C - 12 C vs. G - - <1 (-) 0 (-) <0.05
rs9271366 chr6:32586854 HLA-DQA1 [-9102bp] C - 11 A vs. G 0.2 (G) 0.133 (G) <1 (-) 60 (-) <0.05
rs33964890 chr6:32583919 HLA-DQA1 [-12037bp] C - 4 T vs. C 0.358 (C) 0.242 (C) >1 (-) 0 (-) <0.05
rs4947344 chr6:32677846 HLA-DQA2 [-31273bp] C - 12 T vs. C 0.308 (T) 0.333 (T) >1 (-) 19 (-) <0.05
rs9271588 chr6:32590953 HLA-DQA1 [-5003bp] C - 9 T vs. C 0.425 (T) 0.483 (T) >1 (-) 44 (-) <0.05
rs9271587 chr6:32590916 HLA-DQA1 [-5040bp] C - 9 A vs. G 0.425 (A) 0.467 (A) >1 (-) 44 (-) <0.05
rs3129712 chr6:32657200 HLA-DQB1 [+21040bp] C - 10 A vs. T 0.258 (A) 0.392 (A) <1 (-) 0 (-) <0.05
rs9275273 chr6:32662559 HLA-DQB1 [+26399bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs9271234 chr6:32579549 HLA-DQA1 [-16407bp] C - 5 A vs. G - - <1 (-) 38 (-) <0.05
rs9275577 chr6:32679345 HLA-DQA2 [-29774bp] C - 12 A vs. T 0.425 (A) 0.408 (A) >1 (-) 71 (-) <0.05
rs9275272 chr6:32662546 HLA-DQB1 [+26386bp] C - 12 C vs. G - - <1 (-) 0 (-) <0.05
rs2856668 chr6:32663606 HLA-DQB1 [+27446bp] C - 12 C vs. G 0.433 (G) 0.242 (G) <1 (-) 38 (-) <0.05
rs522308 chr6:32581922 HLA-DQA1 [-14034bp] C - 4 T vs. C 0.417 (T) 0.1 (T) <1 (-) 0 (-) <0.05
rs2647016 chr6:32663925 HLA-DQB1 [+27765bp] C - 12 A vs. C 0.417 (C) 0.233 (C) <1 (-) 37 (-) <0.05
rs9271382 chr6:32587375 HLA-DQA1 [-8581bp] C - 4 A vs. G 0.492 (G) 0.467 (A) <1 (-) 5 (-) <0.05
rs3129720 chr6:32663631 HLA-DQB1 [+27471bp] C - 12 T vs. C 0.3 (T) 0.158 (T) >1 (-) 27 (-) <0.05
rs9271184 chr6:32578285 HLA-DQA1 [-17671bp] C - 4 A vs. C - - >1 (-) 48 (-) <0.05
rs2858320 chr6:32661293 HLA-DQB1 [+25133bp] C - 12 A vs. G 0.45 (A) 0.408 (A) >1 (-) 33 (-) <0.05
rs2647021 chr6:32663151 HLA-DQB1 [+26991bp] C - 12 T vs. C - - >1 (-) 38 (-) <0.05
rs2894378 chr6:32580880 HLA-DQA1 [-15076bp] C - 5 A vs. G 0.35 (G) 0.183 (G) <1 (-) 41 (-) <0.05
rs140012631 chr6:32579334 HLA-DQA1 [-16622bp] C - 5 T vs. C - - <1 (-) 0 (-) <0.05
rs66709408 chr6:32670414 HLA-DQB1 [+34254bp] C - 12 T vs. C 0.15 (T) 0.167 (T) >1 (-) 59 (-) <0.05
rs72850056 chr6:32579077 HLA-DQA1 [-16879bp] C - 5 A vs. G 0.167 (A) - <1 (-) 0 (-) <0.05
rs2647003 chr6:32664880 HLA-DQB1 [+28720bp] C - 12 T vs. G 0.417 (T) 0.233 (T) >1 (-) 36 (-) <0.05
rs2856666 chr6:32665285 HLA-DQB1 [+29125bp] C - 12 T vs. G 0.408 (G) 0.233 (G) <1 (-) 36 (-) <0.05
rs2647001 chr6:32665086 HLA-DQB1 [+28926bp] C - 12 T vs. C 0.417 (C) 0.233 (C) <1 (-) 36 (-) <0.05
rs9275322 chr6:32666560 HLA-DQB1 [+30400bp] C - 12 C vs. G 0.325 (G) 0.292 (G) >1 (-) 66 (-) <0.05

Association studies for this region [+]