HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275101 chr6:32649355 HLA-DQB1 [+13195bp] C - 11 A vs. G 0.442 (A) 0.292 (G) <1 (-) 18 (-) <0.05
rs9271444 chr6:32588281 HLA-DQA1 [-7675bp] C - 3 A vs. G 0.442 (A) - >1 (-) 0 (-) <0.05
rs9275103 chr6:32649386 HLA-DQB1 [+13226bp] C - 11 T vs. C 0.408 (C) 0.292 (T) >1 (-) 17 (-) <0.05
rs9271440 chr6:32588240 HLA-DQA1 [-7716bp] C - 3 T vs. C 0.475 (C) - <1 (-) 0 (-) <0.05
rs9271506 chr6:32589380 HLA-DQA1 [-6576bp] C - 4 T vs. C 0.492 (C) 0.45 (C) <1 (-) 0 (-) <0.05
rs9275106 chr6:32649475 HLA-DQB1 [+13315bp] C - 11 T vs. C 0.433 (C) 0.267 (T) >1 (-) 17 (-) <0.05
rs9271507 chr6:32589394 HLA-DQA1 [-6562bp] C - 4 A vs. C 0.492 (C) 0.417 (C) <1 (-) 0 (-) <0.05
rs3021057 chr6:32652363 HLA-DQB1 [+16203bp] C - 12 T vs. C 0.383 (T) 0.317 (C) <1 (-) 20 (-) <0.05
rs9271505 chr6:32589375 HLA-DQA1 [-6581bp] C - 4 T vs. G - - >1 (-) 0 (-) <0.05
rs9275105 chr6:32649416 HLA-DQB1 [+13256bp] C - 11 T vs. C 0.392 (T) 0.267 (C) <1 (-) 17 (-) <0.05
rs3021058 chr6:32652359 HLA-DQB1 [+16199bp] C - 12 A vs. C 0.383 (C) 0.308 (A) >1 (-) 20 (-) <0.05
rs9271463 chr6:32588535 HLA-DQA1 [-7421bp] C - 3 A vs. T 0.45 (A) - >1 (-) 0 (-) <0.05
rs112270441 chr6:32582980 HLA-DQA1 [-12976bp] C - 4 T vs. C 0.142 (T) - <1 (-) 0 (-) <0.05
rs9271446 chr6:32588344 HLA-DQA1 [-7612bp] C - 3 A vs. G 0.442 (A) - >1 (-) 0 (-) <0.05
rs9271176 chr6:32578127 HLA-DQA1 [-17829bp] C - 5 A vs. G 0.408 (A) 0.192 (A) >1 (-) 9 (-) <0.05
rs9271457 chr6:32588446 HLA-DQA1 [-7510bp] C - 3 T vs. C 0.483 (C) - <1 (-) 0 (-) <0.05
rs9275154 chr6:32652435 HLA-DQB1 [+16275bp] C - 12 T vs. C 0.425 (T) 0.3 (C) <1 (-) 21 (-) <0.05
rs9271422 chr6:32587860 HLA-DQA1 [-8096bp] C - 4 A vs. G - - <1 (-) 24 (-) <0.05
rs9271174 chr6:32578040 HLA-DQA1 [-17916bp] C - 6 C vs. G 0.35 (C) 0.183 (C) >1 (-) 0 (-) <0.05
rs9271512 chr6:32589510 HLA-DQA1 [-6446bp] C - 4 A vs. G 0.425 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs3135005 chr6:32586019 HLA-DQA1 [-9937bp] All: C 99,286 13 A vs. G 0.2 (A) 0.15 (A) 1.08 (1.03-1.13) 50 (5-73) 0.003
rs9275162 chr6:32652687 HLA-DQB1 [+16527bp] C - 12 T vs. C 0.425 (C) 0.275 (T) >1 (-) 21 (-) <0.05
rs36173887 chr6:32602086 HLA-DQA1 C - 3 A vs. G 0.125 (G) - >1 (-) 52 (-) <0.05
rs9275155 chr6:32652484 HLA-DQB1 [+16324bp] C - 12 A vs. T 0.4 (A) 0.292 (T) <1 (-) 20 (-) <0.05
rs9275161 chr6:32652636 HLA-DQB1 [+16476bp] C - 12 T vs. C 0.383 (C) 0.3 (T) >1 (-) 22 (-) <0.05
rs9271467 chr6:32588613 HLA-DQA1 [-7343bp] C - 3 T vs. C 0.5 (C) 0.417 (T) >1 (-) 0 (-) <0.05
rs9271468 chr6:32588616 HLA-DQA1 [-7340bp] C - 3 A vs. G 0.5 (G) 0.417 (G) <1 (-) 0 (-) <0.05
rs9275158 chr6:32652582 HLA-DQB1 [+16422bp] C - 12 A vs. G 0.417 (A) 0.267 (G) <1 (-) 20 (-) <0.05
rs28383312 chr6:32587090 HLA-DQA1 [-8866bp] All: C 42,293 4 T vs. C 0.442 (T) 0.392 (T) 0.88 (0.81-0.96) 0 (0-73) 0.003
rs9271202 chr6:32578837 HLA-DQA1 [-17119bp] C - 5 A vs. C 0.375 (A) 0.183 (A) >1 (-) 9 (-) <0.05
rs2856693 chr6:32653283 HLA-DQB1 [+17123bp] All: C 100,472 13 T vs. C 0.442 (T) 0.292 (C) 0.94 (0.91-0.98) 24 (0-61) 0.003
rs9271557 chr6:32590331 HLA-DQA1 [-5625bp] C - 4 T vs. C - - >1 (-) 0 (-) <0.05
rs9271556 chr6:32590324 HLA-DQA1 [-5632bp] C - 4 T vs. G - - >1 (-) 0 (-) <0.05
rs9271482 chr6:32588880 HLA-DQA1 [-7076bp] C - 3 T vs. C 0.45 (C) 0.442 (C) <1 (-) 0 (-) <0.05
rs9271483 chr6:32588882 HLA-DQA1 [-7074bp] C - 3 T vs. G 0.458 (G) 0.417 (G) <1 (-) 0 (-) <0.05
rs9271201 chr6:32578818 HLA-DQA1 [-17138bp] C - 5 A vs. C 0.35 (C) 0.183 (C) <1 (-) 10 (-) <0.05
rs3021056 chr6:32655921 HLA-DQB1 [+19761bp] C - 10 T vs. C - - <1 (-) 0 (-) <0.05
rs9271200 chr6:32578756 HLA-DQA1 [-17200bp] C - 5 T vs. C 0.358 (C) 0.183 (C) <1 (-) 8 (-) <0.05
rs9271198 chr6:32578726 HLA-DQA1 [-17230bp] C - 5 A vs. G 0.358 (G) 0.183 (G) <1 (-) 11 (-) <0.05
rs9271199 chr6:32578735 HLA-DQA1 [-17221bp] C - 5 A vs. G 0.358 (A) 0.183 (A) >1 (-) 11 (-) <0.05
rs9271555 chr6:32590319 HLA-DQA1 [-5637bp] C - 4 T vs. G - - >1 (-) 0 (-) <0.05
rs9271479 chr6:32588830 HLA-DQA1 [-7126bp] C - 3 A vs. G 0.467 (G) 0.45 (G) <1 (-) 0 (-) <0.05
rs6941972 chr6:32583529 HLA-DQA1 [-12427bp] C - 3 A vs. G 0.275 (A) 0.233 (A) <1 (-) 23 (-) <0.05
rs3104405 chr6:32682308 HLA-DQA2 [-26811bp] C - 11 A vs. C 0.333 (C) 0.317 (C) <1 (-) 9 (-) <0.05
rs9271481 chr6:32588877 HLA-DQA1 [-7079bp] All: C 96,077 11 A vs. G 0.233 (A) 0.183 (A) 1.09 (1.03-1.16) 60 (23-80) 0.005
rs9271205 chr6:32578941 HLA-DQA1 [-17015bp] C - 5 A vs. G 0.35 (G) 0.183 (G) <1 (-) 15 (-) <0.05
rs9271363 chr6:32586732 HLA-DQA1 [-9224bp] C - 11 C vs. G 0.217 (G) 0.242 (G) <1 (-) 62 (-) <0.05
rs9271421 chr6:32587859 HLA-DQA1 [-8097bp] C - 11 T vs. C 0.217 (T) 0.092 (T) >1 (-) 58 (-) <0.05
rs28380113 chr6:32582492 HLA-DQA1 [-13464bp] C - 5 T vs. C 0.142 (T) - <1 (-) 0 (-) <0.05
rs9271423 chr6:32587897 HLA-DQA1 [-8059bp] C - 11 T vs. G 0.2 (G) 0.175 (G) <1 (-) 59 (-) <0.05

Association studies for this region [+]