HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271192 chr6:32578530 HLA-DQA1 [-17426bp] All: C 84,927 7 C vs. A 0.367 (C) 0.158 (C) 1.10 (1.04-1.16) 0 (0-65) 4.27e-04
rs9271189 chr6:32578357 HLA-DQA1 [-17599bp] All: C 84,927 7 C vs. T 0.367 (C) 0.183 (C) 1.10 (1.04-1.16) 0 (0-65) 4.29e-04
rs3129757 chr6:32584609 HLA-DQA1 [-11347bp] All: C 98,840 12 A vs. C 0.2 (A) 0.142 (A) 1.11 (1.05-1.18) 45 (0-72) 4.36e-04
rs9275615 chr6:32684272 HLA-DQA2 [-24847bp] C - 11 A vs. T 0.142 (A) 0.175 (A) <1 (-) 0 (-) <0.05
rs9273363 chr6:32626272 HLA-DQB1 [-972bp] C - 4 A vs. C 0.325 (A) 0.383 (A) <1 (-) 0 (-) <0.05
rs28507026 chr6:32582485 HLA-DQA1 [-13471bp] C - 4 A vs. G 0.15 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs13204736 chr6:32582603 HLA-DQA1 [-13353bp] All: C 45,262 5 A vs. G 0.433 (A) 0.417 (A) 0.85 (0.78-0.93) 0 (0-61) 4.60e-04
rs9271525 chr6:32589842 HLA-DQA1 [-6114bp] All: C 81,958 6 G vs. A 0.225 (G) 0.158 (G) 1.13 (1.06-1.21) 70 (29-87) 4.60e-04
rs9271323 chr6:32582454 HLA-DQA1 [-13502bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs34656207 chr6:32582601 HLA-DQA1 [-13355bp] All: C 45,262 5 T vs. C 0.417 (T) 0.433 (T) 0.86 (0.78-0.93) 0 (0-61) 4.70e-04
rs35186928 chr6:32582604 HLA-DQA1 [-13352bp] All: C 45,262 5 A vs. G 0.433 (A) 0.417 (A) 0.86 (0.78-0.93) 0 (0-61) 4.70e-04
rs3104389 chr6:32595097 HLA-DQA1 [-859bp] All: C 44,247 3 A vs. C 0.392 (A) 0.392 (A) 0.89 (0.84-0.95) 0 (0-75) 4.95e-04
rs9275531 chr6:32675592 HLA-DQA2 [-33527bp] All: C 103,235 14 G vs. A 0.308 (G) 0.2 (G) 0.93 (0.89-0.97) 64 (35-80) 5.22e-04
rs9271165 chr6:32577785 HLA-DQA1 [-18171bp] All: C 84,927 7 A vs. G 0.392 (A) 0.183 (A) 1.10 (1.04-1.15) 0 (0-71) 5.23e-04
rs9271643 chr6:32592229 HLA-DQA1 [-3727bp] All: C 44,247 3 A vs. G 0.367 (A) 0.367 (A) 0.88 (0.82-0.95) 10 (0-91) 5.24e-04
rs9271644 chr6:32592337 HLA-DQA1 [-3619bp] All: C 44,247 3 A vs. G 0.358 (A) 0.375 (A) 0.88 (0.82-0.95) 10 (0-91) 5.26e-04
rs9273368 chr6:32626475 HLA-DQB1 [-769bp] C - 4 A vs. G 0.325 (A) 0.383 (A) <1 (-) 0 (-) <0.05
rs9271164 chr6:32577784 HLA-DQA1 [-18172bp] All: C 84,927 7 C vs. T 0.392 (C) 0.183 (C) 1.10 (1.04-1.15) 0 (0-71) 5.28e-04
rs3997872 chr6:32580617 HLA-DQA1 [-15339bp] C - 3 A vs. T 0.267 (A) 0.083 (A) <1 (-) 21 (-) <0.05
rs4959030 chr6:32591751 HLA-DQA1 [-4205bp] All: C 44,247 3 A vs. G 0.217 (A) 0.083 (A) 1.16 (1.07-1.26) 27 (0-92) 5.42e-04
rs9275585 chr6:32680350 HLA-DQA2 [-28769bp] All: C 99,286 13 C vs. T 0.308 (C) 0.2 (C) 0.93 (0.90-0.97) 67 (41-82) 5.68e-04
rs3104413 chr6:32582650 HLA-DQA1 [-13306bp] C - 3 C vs. G 0.267 (G) 0.167 (G) >1 (-) 12 (-) <0.05
rs9275586 chr6:32680376 HLA-DQA2 [-28743bp] All: C 99,286 13 T vs. G 0.3 (T) 0.2 (T) 0.93 (0.90-0.97) 67 (41-82) 5.71e-04
rs9271628 chr6:32591971 HLA-DQA1 [-3985bp] All: C 44,247 3 G vs. T 0.35 (G) - 0.88 (0.82-0.95) 19 (0-92) 6.07e-04
rs9271514 chr6:32589613 HLA-DQA1 [-6343bp] C - 8 A vs. G 0.408 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs9275141 chr6:32651117 HLA-DQB1 [+14957bp] All: C 103,235 14 G vs. T 0.45 (G) 0.267 (T) 0.95 (0.92-0.98) 0 (0-53) 6.31e-04
rs3129785 chr6:32656724 HLA-DQB1 [+20564bp] All: C 93,567 12 C vs. T - - 1.08 (1.04-1.14) 0 (0-18) 6.36e-04
rs2856667 chr6:32665079 HLA-DQB1 [+28919bp] All: C 103,235 14 C vs. T 0.45 (C) 0.267 (T) 0.95 (0.92-0.98) 17 (0-55) 6.43e-04
rs2395516 chr6:32580657 HLA-DQA1 [-15299bp] All: C 45,262 5 C vs. T 0.375 (C) 0.408 (C) 0.88 (0.82-0.95) 0 (0-77) 6.44e-04
rs3129747 chr6:32581008 HLA-DQA1 [-14948bp] All: C 45,262 5 T vs. C - - 1.14 (1.06-1.22) 0 (0-77) 6.58e-04
rs9271772 chr6:32594275 HLA-DQA1 [-1681bp] All: C 77,007 4 G vs. A 0.225 (G) 0.242 (G) 1.12 (1.05-1.19) 60 (0-87) 6.64e-04
rs9275593 chr6:32680843 HLA-DQA2 [-28276bp] All: C 99,286 13 A vs. G 0.317 (A) 0.2 (A) 0.93 (0.90-0.97) 67 (41-82) 6.67e-04
rs9271406 chr6:32587588 HLA-DQA1 [-8368bp] C - 3 A vs. G 0.442 (A) 0.492 (A) >1 (-) 0 (-) <0.05
rs9271607 chr6:32591566 HLA-DQA1 [-4390bp] All: C 44,247 3 G vs. A 0.383 (G) 0.383 (G) 0.89 (0.83-0.95) 18 (0-91) 6.99e-04
rs2002779 chr6:32601684 HLA-DQA1 All: C 40,613 3 T vs. G 0.208 (T) 0.158 (T) 1.24 (1.10-1.41) 78 (27-93) 7.11e-04
rs2516006 chr6:32650268 HLA-DQB1 [+14108bp] C - 8 T vs. C 0.25 (C) 0.242 (C) >1 (-) 0 (-) <0.05
rs9275590 chr6:32680480 HLA-DQA2 [-28639bp] All: C 99,286 13 C vs. T 0.308 (C) 0.192 (C) 0.94 (0.90-0.97) 67 (41-82) 7.18e-04
rs9271687 chr6:32592985 HLA-DQA1 [-2971bp] All: C 44,247 3 A vs. G 0.225 (A) 0.142 (A) 1.17 (1.07-1.28) 22 (0-92) 7.21e-04
rs2858329 chr6:32658801 HLA-DQB1 [+22641bp] All: C 103,235 14 G vs. A - - 0.94 (0.90-0.97) 17 (0-55) 7.22e-04
rs9271592 chr6:32591173 HLA-DQA1 [-4783bp] All: C 52,167 6 T vs. C 0.375 (T) 0.375 (T) 0.89 (0.84-0.95) 0 (0-57) 7.27e-04
rs9271515 chr6:32589645 HLA-DQA1 [-6311bp] C - 5 A vs. G 0.417 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs9271605 chr6:32591448 HLA-DQA1 [-4508bp] All: C 44,247 3 A vs. G 0.375 (A) 0.375 (A) 0.89 (0.83-0.95) 19 (0-92) 7.70e-04
rs9275160 chr6:32652620 HLA-DQB1 [+16460bp] All: C 89,618 11 A vs. G 0.317 (A) 0.35 (A) 0.92 (0.87-0.97) 0 (0-56) 7.95e-04
rs9275595 chr6:32681355 HLA-DQA2 [-27764bp] All: C 99,286 13 C vs. T 0.308 (C) 0.2 (C) 0.94 (0.90-0.97) 66 (39-81) 7.97e-04
rs7745040 chr6:32664332 HLA-DQB1 [+28172bp] All: C 103,235 14 C vs. T 0.375 (C) 0.483 (T) 0.95 (0.91-0.98) 0 (0-34) 8.01e-04
rs9275123 chr6:32650256 HLA-DQB1 [+14096bp] All: C 99,286 13 T vs. G 0.442 (T) 0.267 (G) 0.94 (0.90-0.97) 1 (0-57) 8.19e-04
rs9275145 chr6:32651363 HLA-DQB1 [+15203bp] All: C 103,235 14 T vs. C 0.45 (T) 0.258 (C) 0.95 (0.91-0.98) 0 (0-54) 8.26e-04
rs9275582 chr6:32680070 HLA-DQA2 [-29049bp] All: C 99,286 13 T vs. C 0.308 (T) 0.2 (T) 0.94 (0.90-0.97) 67 (42-82) 8.28e-04
rs2894380 chr6:32664675 HLA-DQB1 [+28515bp] All: C 103,235 14 G vs. A 0.375 (G) 0.475 (A) 0.95 (0.92-0.98) 0 (0-32) 8.29e-04
rs9275571 chr6:32678847 HLA-DQA2 [-30272bp] All: C 103,235 14 G vs. T 0.308 (G) 0.242 (G) 0.94 (0.90-0.97) 64 (36-80) 8.31e-04

Association studies for this region [+]