HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275207 chr6:32657710 HLA-DQB1 [+21550bp] C - 10 A vs. G 0.167 (G) - >1 (-) 13 (-) <0.05
rs9275213 chr6:32658335 HLA-DQB1 [+22175bp] C - 10 T vs. C 0.175 (C) 0.042 (C) >1 (-) 14 (-) <0.05
rs9271655 chr6:32592567 HLA-DQA1 [-3389bp] All: C 44,247 3 G vs. A 0.267 (G) - 1.15 (1.07-1.24) 0 (0-84) 2.10e-04
rs9271769 chr6:32594217 HLA-DQA1 [-1739bp] All: C 44,247 3 T vs. G 0.383 (T) 0.392 (T) 0.89 (0.83-0.94) 0 (0-55) 2.13e-04
rs9275639 chr6:32684831 HLA-DQA2 [-24288bp] C - 12 A vs. T - - >1 (-) 0 (-) <0.05
rs9275338 chr6:32667343 HLA-DQB1 [+31183bp] C - 12 A vs. T 0.175 (T) 0.258 (T) >1 (-) 0 (-) <0.05
rs35928237 chr6:32583461 HLA-DQA1 [-12495bp] All: C 45,262 5 C vs. T - - 1.15 (1.07-1.23) 12 (0-82) 2.29e-04
rs9275206 chr6:32657565 HLA-DQB1 [+21405bp] C - 10 A vs. G 0.158 (G) 0.092 (G) >1 (-) 15 (-) <0.05
rs9271146 chr6:32577282 HLA-DQA1 [-18674bp] All: C 84,927 7 A vs. C 0.358 (A) 0.125 (A) 1.11 (1.05-1.17) 0 (0-59) 2.30e-04
rs35534739 chr6:32583490 HLA-DQA1 [-12466bp] All: C 45,262 5 A vs. G 0.492 (A) 0.342 (G) 1.15 (1.07-1.24) 13 (0-82) 2.42e-04
rs34341844 chr6:32583496 HLA-DQA1 [-12460bp] All: C 45,262 5 G vs. A 0.483 (G) 0.383 (A) 1.15 (1.07-1.24) 13 (0-82) 2.43e-04
rs9271172 chr6:32577975 HLA-DQA1 [-17981bp] All: C 85,373 8 C vs. T 0.383 (C) 0.183 (C) 1.10 (1.04-1.16) 0 (0-56) 2.52e-04
rs9275339 chr6:32667406 HLA-DQB1 [+31246bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 63 (35-79) 2.55e-04
rs35029150 chr6:32583426 HLA-DQA1 [-12530bp] All: C 45,262 5 T vs. G 0.483 (T) 0.392 (G) 1.14 (1.06-1.23) 11 (0-82) 2.57e-04
rs9271173 chr6:32577981 HLA-DQA1 [-17975bp] All: C 85,373 8 A vs. G 0.367 (A) 0.183 (A) 1.10 (1.04-1.15) 0 (0-56) 2.58e-04
rs9275640 chr6:32684890 HLA-DQA2 [-24229bp] C - 11 T vs. C - - >1 (-) 0 (-) <0.05
rs9275191 chr6:32656235 HLA-DQB1 [+20075bp] All: C 93,567 12 C vs. T 0.292 (C) 0.425 (T) 0.91 (0.87-0.96) 0 (0-38) 2.61e-04
rs685244 chr6:32584769 HLA-DQA1 [-11187bp] All: C 45,262 5 A vs. G 0.383 (A) 0.342 (G) 1.15 (1.07-1.24) 45 (0-80) 2.65e-04
rs9275214 chr6:32658665 HLA-DQB1 [+22505bp] C - 10 A vs. G 0.167 (A) 0.058 (A) <1 (-) 15 (-) <0.05
rs9275223 chr6:32659839 HLA-DQB1 [+23679bp] C - 8 A vs. G 0.175 (A) 0.075 (A) <1 (-) 25 (-) <0.05
rs3104391 chr6:32594901 HLA-DQA1 [-1055bp] C - 3 T vs. C 0.25 (T) 0.133 (T) >1 (-) 0 (-) <0.05
rs34537691 chr6:32584295 HLA-DQA1 [-11661bp] All: C 45,262 5 A vs. G 0.475 (A) - 1.17 (1.07-1.27) 0 (0-65) 2.89e-04
rs28383223 chr6:32583477 HLA-DQA1 [-12479bp] C - 4 T vs. C 0.358 (C) 0.3 (T) <1 (-) 0 (-) <0.05
rs9275190 chr6:32656228 HLA-DQB1 [+20068bp] All: C 93,567 12 G vs. A 0.267 (G) 0.442 (A) 0.91 (0.87-0.96) 0 (0-40) 2.98e-04
rs3998158 chr6:32681992 HLA-DQA2 [-27127bp] All: C 99,286 13 C vs. T 0.317 (C) 0.183 (C) 0.93 (0.89-0.97) 64 (36-80) 2.99e-04
rs3997854 chr6:32682915 HLA-DQA2 [-26204bp] C - 12 T vs. G 0.142 (G) 0.117 (G) >1 (-) 0 (-) <0.05
rs9271163 chr6:32577733 HLA-DQA1 [-18223bp] All: C 84,927 7 C vs. T 0.383 (C) 0.183 (C) 1.10 (1.04-1.16) 0 (0-61) 3.02e-04
rs9271775 chr6:32594328 HLA-DQA1 [-1628bp] All: C 80,956 5 C vs. T 0.217 (C) 0.225 (C) 1.12 (1.05-1.20) 46 (0-80) 3.16e-04
rs9275614 chr6:32684257 HLA-DQA2 [-24862bp] C - 12 A vs. G 0.142 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs9275609 chr6:32683713 HLA-DQA2 [-25406bp] C - 12 C vs. G 0.142 (G) 0.225 (G) >1 (-) 0 (-) <0.05
rs9275618 chr6:32684387 HLA-DQA2 [-24732bp] C - 12 A vs. G 0.142 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs9271693 chr6:32593033 HLA-DQA1 [-2923bp] All: C 44,247 3 T vs. C 0.383 (T) 0.383 (T) 0.87 (0.81-0.94) 0 (0-88) 3.42e-04
rs28752509 chr6:32579623 HLA-DQA1 [-16333bp] C - 5 T vs. C 0.475 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs28752510 chr6:32579626 HLA-DQA1 [-16330bp] C - 5 A vs. G 0.475 (A) 0.358 (A) <1 (-) 0 (-) <0.05
rs1794275 chr6:32671248 HLA-DQB1 [+35088bp] All: C 99,286 13 A vs. G 0.175 (A) 0.208 (A) 1.08 (1.04-1.13) 45 (0-71) 3.53e-04
rs9271685 chr6:32592970 HLA-DQA1 [-2986bp] All: C 44,247 3 C vs. T 0.4 (C) 0.375 (C) 0.87 (0.81-0.94) 0 (0-89) 3.61e-04
rs9271660 chr6:32592602 HLA-DQA1 [-3354bp] All: C 44,247 3 G vs. T 0.383 (G) 0.4 (G) 0.87 (0.81-0.94) 0 (0-89) 3.62e-04
rs9271675 chr6:32592862 HLA-DQA1 [-3094bp] All: C 44,247 3 C vs. T 0.383 (C) 0.35 (C) 0.87 (0.81-0.94) 0 (0-89) 3.68e-04
rs9271674 chr6:32592845 HLA-DQA1 [-3111bp] All: C 44,247 3 C vs. T 0.392 (C) 0.35 (C) 0.87 (0.81-0.94) 0 (0-89) 3.69e-04
rs9271186 chr6:32578297 HLA-DQA1 [-17659bp] All: C 84,927 7 A vs. G 0.35 (A) 0.217 (A) 1.10 (1.04-1.16) 0 (0-65) 3.73e-04
rs9271637 chr6:32592124 HLA-DQA1 [-3832bp] All: C 44,247 3 G vs. A 0.342 (G) - 0.87 (0.80-0.94) 3 (0-90) 3.84e-04
rs9271676 chr6:32592868 HLA-DQA1 [-3088bp] All: C 44,247 3 C vs. T 0.383 (C) 0.358 (C) 0.87 (0.81-0.94) 0 (0-89) 3.90e-04
rs3104414 chr6:32582612 HLA-DQA1 [-13344bp] All: C 11,858 4 A vs. G 0.433 (A) 0.233 (A) 0.82 (0.73-0.91) 0 (0-68) 3.91e-04
rs9275210 chr6:32657817 HLA-DQB1 [+21657bp] All: C 93,567 12 T vs. C 0.425 (T) 0.442 (C) 0.93 (0.89-0.97) 17 (0-57) 3.91e-04
rs9271348 chr6:32583742 HLA-DQA1 [-12214bp] All: C 45,262 5 G vs. A 0.333 (G) 0.183 (G) 1.13 (1.06-1.21) 0 (0-68) 3.97e-04
rs6936863 chr6:32684029 HLA-DQA2 [-25090bp] C - 12 C vs. G 0.217 (G) 0.3 (G) >1 (-) 0 (-) <0.05
rs686250 chr6:32585055 HLA-DQA1 [-10901bp] All: C 45,262 5 A vs. G 0.325 (A) 0.442 (A) 1.14 (1.06-1.23) 44 (0-80) 4.10e-04
rs9271194 chr6:32578612 HLA-DQA1 [-17344bp] All: C 84,927 7 T vs. G 0.367 (T) 0.183 (T) 1.10 (1.04-1.16) 0 (0-65) 4.11e-04
rs9271193 chr6:32578566 HLA-DQA1 [-17390bp] All: C 84,927 7 T vs. C 0.358 (T) 0.183 (T) 1.10 (1.04-1.16) 0 (0-65) 4.19e-04
rs3916765 chr6:32685550 HLA-DQA2 [-23569bp] C - 12 A vs. G 0.142 (A) 0.125 (A) <1 (-) 0 (-) <0.05

Association studies for this region [+]