HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17212153 chr6:32651092 HLA-DQB1 [+14932bp] C - 7 T vs. G 0.125 (T) 0.308 (T) >1 (-) 36 (-) >0.05
rs116086872 chr6:32683677 HLA-DQA2 [-25442bp] C - 9 A vs. G 0.033 (A) - >1 (-) 31 (-) >0.05
rs9391742 chr6:32679608 HLA-DQA2 [-29511bp] C - 12 A vs. C 0.258 (A) 0.317 (A) <1 (-) 31 (-) >0.05
rs9271401 chr6:32587525 HLA-DQA1 [-8431bp] C - 4 A vs. G 0.142 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs9272193 chr6:32601785 HLA-DQA1 C - 3 T vs. G - - <1 (-) 53 (-) >0.05
rs9394113 chr6:32665167 HLA-DQB1 [+29007bp] C - 12 A vs. G 0.183 (G) 0.3 (G) >1 (-) 2 (-) >0.05
rs62406889 chr6:32672214 HLA-DQB1 [+36054bp] C - 10 T vs. G 0.042 (T) 0.017 (T) >1 (-) 30 (-) >0.05
rs9378124 chr6:32679605 HLA-DQA2 [-29514bp] C - 12 A vs. G 0.267 (G) 0.317 (G) >1 (-) 31 (-) >0.05
rs1794519 chr6:32662473 HLA-DQB1 [+26313bp] C - 7 A vs. C - - <1 (-) 0 (-) >0.05
rs76175267 chr6:32664704 HLA-DQB1 [+28544bp] C - 9 T vs. C - 0.042 (T) <1 (-) 11 (-) >0.05
rs75444829 chr6:32664683 HLA-DQB1 [+28523bp] C - 9 T vs. C - - <1 (-) 11 (-) >0.05
rs28891491 chr6:32661080 HLA-DQB1 [+24920bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28891493 chr6:32662509 HLA-DQB1 [+26349bp] C - 12 A vs. T - - <1 (-) 1 (-) >0.05
rs9272135 chr6:32600723 HLA-DQA1 C - 5 A vs. G 0.367 (A) 0.308 (A) <1 (-) 18 (-) >0.05
rs28772284 chr6:32674313 HLA-DQA2 [-34806bp] C - 12 T vs. C 0.183 (T) 0.3 (T) >1 (-) 8 (-) >0.05
chr6:32601968 chr6:32601968 HLA-DQA1 C - 5 T vs. C - - <1 (-) 66 (-) >0.05
rs28752516 chr6:32583611 HLA-DQA1 [-12345bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs12212951 chr6:32581233 HLA-DQA1 [-14723bp] C - 4 T vs. C 0.133 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs10947319 chr6:32581454 HLA-DQA1 [-14502bp] C - 4 T vs. C 0.133 (T) - >1 (-) 0 (-) >0.05
rs9272171 chr6:32601249 HLA-DQA1 C - 3 A vs. G 0.283 (G) 0.208 (G) >1 (-) 53 (-) >0.05
rs28371251 chr6:32653018 HLA-DQB1 [+16858bp] C - 8 T vs. C 0.25 (C) 0.483 (T) <1 (-) 43 (-) >0.05
rs28772285 chr6:32674380 HLA-DQA2 [-34739bp] C - 12 T vs. G 0.183 (T) 0.325 (T) >1 (-) 7 (-) >0.05
rs28772286 chr6:32674385 HLA-DQA2 [-34734bp] C - 12 T vs. C 0.183 (C) 0.308 (C) <1 (-) 7 (-) >0.05
rs2647019 chr6:32663355 HLA-DQB1 [+27195bp] C - 7 C vs. G 0.1 (C) 0.042 (C) >1 (-) 0 (-) >0.05
rs9272137 chr6:32600738 HLA-DQA1 C - 5 A vs. C 0.358 (C) 0.3 (C) >1 (-) 18 (-) >0.05
rs9378125 chr6:32679732 HLA-DQA2 [-29387bp] C - 11 A vs. G 0.167 (G) 0.25 (G) <1 (-) 5 (-) >0.05
rs9272146 chr6:32600914 HLA-DQA1 C - 5 T vs. C 0.392 (C) 0.358 (C) >1 (-) 18 (-) >0.05
rs9272136 chr6:32600730 HLA-DQA1 C - 5 T vs. C 0.342 (T) 0.292 (T) <1 (-) 18 (-) >0.05
rs9275602 chr6:32682812 HLA-DQA2 [-26307bp] C - 9 A vs. C 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9272479 chr6:32605789 HLA-DQA1 C - 6 A vs. C 0.158 (T) 0.108 (A) <1 (-) 32 (-) >0.05
rs9272138 chr6:32600757 HLA-DQA1 C - 5 A vs. G 0.342 (A) 0.333 (A) <1 (-) 17 (-) >0.05
rs17205177 chr6:32602518 HLA-DQA1 C - 5 A vs. G 0.242 (G) 0.25 (G) >1 (-) 71 (-) >0.05
rs9272156 chr6:32601081 HLA-DQA1 C - 5 T vs. C 0.317 (C) 0.392 (C) >1 (-) 8 (-) >0.05
rs28383216 chr6:32580596 HLA-DQA1 [-15360bp] C - 4 T vs. C 0.125 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs114446488 chr6:32683876 HLA-DQA2 [-25243bp] C - 9 A vs. G 0.033 (A) - >1 (-) 31 (-) >0.05
rs6935069 chr6:32666156 HLA-DQB1 [+29996bp] C - 12 A vs. G 0.183 (A) 0.283 (A) <1 (-) 5 (-) >0.05
rs112745211 chr6:32663916 HLA-DQB1 [+27756bp] C - 8 A vs. G - - >1 (-) 20 (-) >0.05
rs113154049 chr6:32663882 HLA-DQB1 [+27722bp] C - 8 A vs. G - 0.042 (A) <1 (-) 20 (-) >0.05
rs9271562 chr6:32590411 HLA-DQA1 [-5545bp] C - 11 A vs. G 0.133 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs112044727 chr6:32663781 HLA-DQB1 [+27621bp] C - 8 T vs. G - - >1 (-) 19 (-) >0.05
rs9272480 chr6:32605800 HLA-DQA1 C - 6 A vs. G 0.15 (G) 0.1 (G) >1 (-) 32 (-) >0.05
rs17205135 chr6:32602222 HLA-DQA1 C - 5 A vs. G 0.242 (G) 0.25 (G) <1 (-) 70 (-) >0.05
rs17211510 chr6:32602430 HLA-DQA1 C - 5 A vs. C 0.25 (A) 0.258 (A) <1 (-) 71 (-) >0.05
rs112205942 chr6:32664058 HLA-DQB1 [+27898bp] C - 8 A vs. G - 0.042 (G) >1 (-) 20 (-) >0.05
rs5000632 chr6:32663688 HLA-DQB1 [+27528bp] C - 12 T vs. C 0.183 (C) 0.292 (C) >1 (-) 2 (-) >0.05
rs17205128 chr6:32602217 HLA-DQA1 C - 5 C vs. G 0.242 (G) 0.25 (G) <1 (-) 70 (-) >0.05
rs9275421 chr6:32670477 HLA-DQB1 [+34317bp] C - 11 A vs. C 0.325 (A) 0.283 (A) >1 (-) 52 (-) >0.05
rs28891490 chr6:32660697 HLA-DQB1 [+24537bp] C - 11 A vs. C 0.133 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs9272067 chr6:32599401 HLA-DQA1 C - 4 A vs. C 0.375 (A) 0.35 (A) >1 (-) 0 (-) >0.05
rs1794280 chr6:32667171 HLA-DQB1 [+31011bp] C - 8 A vs. T 0.1 (T) - <1 (-) 0 (-) >0.05

Association studies for this region [+]