HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275490 chr6:32673385 HLA-DQA2 [-35734bp] All: C 99,286 13 G vs. C 0.175 (G) 0.067 (G) 0.82 (0.77-0.87) 7 (0-60) 2.36e-10
rs9275347 chr6:32667623 HLA-DQB1 [+31463bp] All: C 99,286 13 G vs. A - - 1.24 (1.16-1.33) 0 (0-48) 1.65e-09
rs9275348 chr6:32667638 HLA-DQB1 [+31478bp] All: C 99,286 13 G vs. A - - 1.24 (1.16-1.33) 0 (0-48) 1.65e-09
rs9275493 chr6:32673475 HLA-DQA2 [-35644bp] All: C 99,286 13 C vs. T 0.2 (C) - 0.83 (0.78-0.89) 0 (0-41) 4.56e-09
rs3873448 chr6:32683055 HLA-DQA2 [-26064bp] All: C 103,235 14 T vs. C 0.133 (T) - 0.85 (0.81-0.90) 0 (0-53) 4.79e-09
rs9275360 chr6:32667937 HLA-DQB1 [+31777bp] All: C 103,235 14 T vs. A 0.192 (T) 0.15 (T) 0.85 (0.81-0.90) 0 (0-4) 6.41e-09
rs3873452 chr6:32683309 HLA-DQA2 [-25810bp] All: C 103,235 14 C vs. G 0.133 (C) 0.167 (C) 0.85 (0.81-0.90) 0 (0-54) 1.97e-08
rs9271148 chr6:32577442 HLA-DQA1 [-18514bp] C - 5 A vs. T 0.208 (T) 0.158 (T) <1 (-) 0 (-) <5.00e-08
rs3873453 chr6:32683382 HLA-DQA2 [-25737bp] All: C 103,235 14 C vs. T - - 1.16 (1.10-1.23) 0 (0-36) 2.13e-08
rs9271597 chr6:32591291 HLA-DQA1 [-4665bp] All: C 89,810 10 A vs. T 0.467 (A) 0.467 (A) 0.87 (0.83-0.92) 14 (0-56) 3.41e-08
rs9275611 chr6:32683763 HLA-DQA2 [-25356bp] All: C 103,235 14 A vs. G 0.142 (A) 0.158 (A) 0.87 (0.82-0.91) 0 (0-43) 3.62e-08
rs9275365 chr6:32668125 HLA-DQB1 [+31965bp] All: C 103,235 14 A vs. G 0.192 (A) 0.25 (A) 0.86 (0.82-0.91) 0 (0-6) 4.13e-08
rs9275642 chr6:32684935 HLA-DQA2 [-24184bp] All: C 103,235 14 C vs. T - - 1.14 (1.09-1.19) 0 (0-46) 4.22e-08
rs9275358 chr6:32667895 HLA-DQB1 [+31735bp] All: C 103,235 14 G vs. C 0.158 (G) 0.225 (G) 0.85 (0.80-0.90) 0 (-) 6.65e-08
rs3873451 chr6:32683240 HLA-DQA2 [-25879bp] All: C 103,235 14 A vs. G - - 1.16 (1.10-1.22) 0 (0-50) 8.44e-08
rs535852 chr6:32577604 HLA-DQA1 [-18352bp] All: C 99,521 13 T vs. C 0.483 (T) 0.333 (T) 0.90 (0.87-0.94) 26 (0-62) 9.04e-08
rs9275319 chr6:32666295 HLA-DQB1 [+30135bp] All: C 103,235 14 G vs. A 0.192 (G) 0.217 (G) 0.88 (0.83-0.92) 0 (0-13) 9.40e-08
rs5021726 chr6:32578481 HLA-DQA1 [-17475bp] All: C 99,521 13 T vs. C - - 1.11 (1.07-1.15) 28 (0-63) 9.81e-08
rs536810 chr6:32577497 HLA-DQA1 [-18459bp] All: C 99,521 13 T vs. C 0.475 (T) 0.317 (T) 0.91 (0.87-0.94) 24 (0-60) 1.50e-07
rs9275312 chr6:32665728 HLA-DQB1 [+29568bp] All: C 103,235 14 G vs. A 0.192 (G) 0.258 (G) 0.88 (0.84-0.92) 0 (0-12) 1.59e-07
rs9275328 chr6:32666822 HLA-DQB1 [+30662bp] All: C 100,402 13 T vs. C 0.183 (T) 0.258 (T) 0.87 (0.83-0.92) 0 (0-11) 1.65e-07
rs9275159 chr6:32652607 HLA-DQB1 [+16447bp] All: C 93,567 12 T vs. C 0.267 (T) 0.442 (T) 0.84 (0.79-0.90) 0 (0-20) 1.75e-07
rs9275318 chr6:32666173 HLA-DQB1 [+30013bp] All: C 103,235 14 G vs. A 0.192 (G) 0.217 (G) 0.88 (0.84-0.92) 0 (0-11) 1.88e-07
rs9271600 chr6:32591332 HLA-DQA1 [-4624bp] All: C 86,977 9 G vs. T 0.458 (G) 0.492 (G) 0.87 (0.83-0.92) 18 (0-60) 1.94e-07
rs9275330 chr6:32666875 HLA-DQB1 [+30715bp] All: C 103,235 14 G vs. A 0.183 (G) 0.258 (G) 0.88 (0.84-0.92) 0 (0-11) 1.97e-07
rs9275331 chr6:32666899 HLA-DQB1 [+30739bp] All: C 103,235 14 G vs. A 0.175 (G) 0.258 (G) 0.88 (0.84-0.92) 0 (0-11) 1.98e-07
rs9275333 chr6:32666968 HLA-DQB1 [+30808bp] All: C 103,235 14 C vs. T 0.183 (C) 0.25 (C) 0.88 (0.84-0.92) 0 (0-11) 2.16e-07
rs5021727 chr6:32578633 HLA-DQA1 [-17323bp] All: C 99,521 13 A vs. G 0.492 (A) 0.433 (G) 1.11 (1.07-1.15) 28 (0-62) 2.17e-07
rs532098 chr6:32578052 HLA-DQA1 [-17904bp] All: C 99,521 13 G vs. A 0.5 (G) 0.45 (A) 1.09 (1.06-1.13) 26 (0-62) 2.17e-07
rs17204995 chr6:32578328 HLA-DQA1 [-17628bp] All: C 99,521 13 G vs. A 0.5 (G) 0.433 (A) 1.10 (1.06-1.15) 27 (0-62) 2.22e-07
rs9275211 chr6:32657844 HLA-DQB1 [+21684bp] All: C 93,567 12 C vs. T 0.267 (C) 0.242 (C) 0.87 (0.83-0.92) 0 (0-50) 2.83e-07
rs502803 chr6:32578958 HLA-DQA1 [-16998bp] All: C 99,521 13 G vs. A 0.492 (G) 0.433 (A) 1.12 (1.07-1.16) 29 (0-63) 2.96e-07
rs9275183 chr6:32654502 HLA-DQB1 [+18342bp] All: C 93,567 12 G vs. A 0.192 (G) 0.217 (G) 0.86 (0.81-0.91) 0 (0-33) 4.16e-07
rs9275641 chr6:32684919 HLA-DQA2 [-24200bp] All: C 99,286 13 C vs. T - - 1.12 (1.07-1.18) 0 (0-48) 4.61e-07
rs7738118 chr6:32684957 HLA-DQA2 [-24162bp] All: C 99,286 13 A vs. G 0.208 (A) 0.217 (A) 0.89 (0.85-0.93) 0 (0-55) 5.24e-07
rs9275608 chr6:32683708 HLA-DQA2 [-25411bp] All: C 103,235 14 G vs. A 0.142 (G) 0.225 (G) 0.88 (0.84-0.92) 0 (0-42) 5.26e-07
rs7738119 chr6:32684959 HLA-DQA2 [-24160bp] All: C 99,286 13 A vs. G 0.217 (A) 0.217 (A) 0.89 (0.85-0.93) 0 (0-55) 5.42e-07
rs9275610 chr6:32683750 HLA-DQA2 [-25369bp] All: C 103,235 14 C vs. T 0.142 (C) 0.242 (C) 0.88 (0.84-0.93) 0 (0-42) 6.77e-07
rs9271155 chr6:32577586 HLA-DQA1 [-18370bp] C - 4 A vs. G 0.217 (G) 0.167 (G) <1 (-) 10 (-) <1.00e-06
rs9275638 chr6:32684760 HLA-DQA2 [-24359bp] All: C 103,235 14 C vs. T - - 1.13 (1.08-1.19) 0 (0-40) 7.45e-07
rs9271161 chr6:32577713 HLA-DQA1 [-18243bp] All: C 84,927 7 T vs. C 0.208 (T) 0.15 (T) 1.18 (1.10-1.26) 49 (0-79) 8.32e-07
rs9271152 chr6:32577531 HLA-DQA1 [-18425bp] All: C 84,927 7 T vs. G 0.208 (T) 0.158 (T) 1.18 (1.10-1.26) 50 (0-79) 8.64e-07
rs6916779 chr6:32684317 HLA-DQA2 [-24802bp] All: C 103,235 14 C vs. T 0.142 (C) 0.233 (C) 0.88 (0.84-0.93) 0 (0-40) 9.53e-07
rs6457636 chr6:32684513 HLA-DQA2 [-24606bp] All: C 103,235 14 A vs. G 0.2 (A) 0.3 (A) 0.88 (0.84-0.93) 0 (0-40) 9.61e-07
rs5024431 chr6:32684344 HLA-DQA2 [-24775bp] All: C 103,235 14 A vs. G 0.217 (A) 0.3 (A) 0.91 (0.87-0.94) 0 (0-43) 1.09e-06
rs9271203 chr6:32578885 HLA-DQA1 [-17071bp] All: C 52,167 6 T vs. C 0.208 (T) 0.158 (T) 1.21 (1.12-1.30) 52 (0-81) 1.44e-06
rs9271191 chr6:32578449 HLA-DQA1 [-17507bp] All: C 52,167 6 T vs. C 0.208 (T) 0.158 (T) 1.21 (1.12-1.30) 51 (0-81) 1.51e-06
rs9271589 chr6:32591128 HLA-DQA1 [-4828bp] All: C 84,927 7 A vs. G 0.383 (A) 0.375 (A) 0.87 (0.82-0.92) 0 (0-68) 1.73e-06
rs9271584 chr6:32590870 HLA-DQA1 [-5086bp] All: C 84,927 7 C vs. T 0.383 (C) 0.375 (C) 0.87 (0.82-0.92) 0 (0-66) 2.19e-06
rs9271585 chr6:32590879 HLA-DQA1 [-5077bp] All: C 84,927 7 A vs. C 0.383 (A) 0.375 (A) 0.87 (0.82-0.92) 0 (0-66) 2.20e-06

Association studies for this region [+]