GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76122174 chr7:23317427 GPNMB [+2700bp] C - 3 A vs. G - - <1 (-) 57 (-) >0.05
rs75441534 chr7:23352453 IGF2BP3 C - 4 T vs. C - - <1 (-) 59 (-) >0.05
rs80009109 chr7:23352134 IGF2BP3 C - 4 T vs. C - - >1 (-) 59 (-) >0.05
rs76298670 chr7:23245251 NUPL2 [+4621bp] C - 12 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs147499496 chr7:23357178 IGF2BP3 C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs13232234 chr7:23267315 GPNMB [-8271bp] C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs117162588 chr7:23298910 GPNMB C - 9 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs117398845 chr7:23334323 MALSU1 [-4035bp] C - 5 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs116891387 chr7:23350226 MALSU1 C - 8 T vs. C 0.008 (C) - <1 (-) 0 (-) >0.05
rs111231600 chr7:23253348 NUPL2 [+12718bp] C - 4 A vs. C - - <1 (-) 63 (-) >0.05
rs76291734 chr7:23358440 IGF2BP3 C - 3 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs117207752 chr7:23287271 GPNMB C - 12 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs142078176 chr7:23283652 GPNMB C - 5 A vs. G - - >1 (-) 0 (-) >0.05
rs142538457 chr7:23286325 GPNMB C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs62468195 chr7:23353566 IGF2BP3 C - 5 T vs. C 0.008 (C) - <1 (-) 14 (-) >0.05
rs78340800 chr7:23313745 GPNMB C - 3 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs76432102 chr7:23348884 MALSU1 C - 4 T vs. C - - >1 (-) 60 (-) >0.05
rs75801644 chr7:23306141 GPNMB C - 4 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs76500485 chr7:23346294 MALSU1 C - 4 T vs. C - - <1 (-) 60 (-) >0.05
rs146703374 chr7:23345705 MALSU1 C - 4 T vs. C - - >1 (-) 60 (-) >0.05
rs11983737 chr7:23323313 GPNMB [+8586bp] C - 4 A vs. C - - >1 (-) 67 (-) >0.05
rs113742951 chr7:23335257 MALSU1 [-3101bp] C - 4 A vs. G - - >1 (-) 60 (-) >0.05
rs77940817 chr7:23331882 MALSU1 [-6476bp] C - 4 C vs. G - - >1 (-) 60 (-) >0.05
rs147118906 chr7:23249003 NUPL2 [+8373bp] C - 10 T vs. C - - <1 (-) 31 (-) >0.05
rs79386431 chr7:23339436 MALSU1 C - 4 A vs. G - - <1 (-) 62 (-) >0.05
rs11971433 chr7:23333370 MALSU1 [-4988bp] C - 4 T vs. C - 0.133 (C) <1 (-) 60 (-) >0.05
rs113980601 chr7:23229673 NUPL2 C - 6 T vs. C - - >1 (-) 31 (-) >0.05
rs80325404 chr7:23330808 MALSU1 [-7550bp] C - 4 T vs. C - 0.108 (T) >1 (-) 62 (-) >0.05
rs73277883 chr7:23325745 GPNMB [+11018bp] C - 4 A vs. G - 0.125 (A) >1 (-) 62 (-) >0.05
rs141184348 chr7:23227655 NUPL2 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs858232 chr7:23241719 NUPL2 [+1089bp] C - 9 C vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs148506782 chr7:23273349 GPNMB [-2237bp] C - 9 A vs. C - - >1 (-) 0 (-) >0.05
rs138631872 chr7:23253600 NUPL2 [+12970bp] C - 11 T vs. G - - <1 (-) 0 (-) >0.05
rs17147950 chr7:23290584 GPNMB C - 4 T vs. C - 0.108 (T) <1 (-) 65 (-) >0.05

Association studies for this region [+]