GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs75951443 chr7:23262266 GPNMB [-13320bp] C - 3 T vs. G - - >1 (-) 76 (-) >0.05
rs17147918 chr7:23261519 GPNMB [-14067bp] C - 3 A vs. T - - <1 (-) 76 (-) >0.05
rs117167014 chr7:23350345 MALSU1 C - 8 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs148578881 chr7:23329755 MALSU1 [-8603bp] C - 6 T vs. C - - >1 (-) 0 (-) >0.05
rs77408448 chr7:23246465 NUPL2 [+5835bp] C - 12 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs41273981 chr7:23352557 IGF2BP3 C - 9 A vs. G 0.008 (G) - <1 (-) 48 (-) >0.05
rs116317113 chr7:23337348 MALSU1 [-1010bp] C - 7 A vs. G - - <1 (-) 26 (-) >0.05
rs74550556 chr7:23290778 GPNMB C - 3 T vs. C - 0.108 (T) <1 (-) 76 (-) >0.05
rs79508410 chr7:23290427 GPNMB C - 3 T vs. C - 0.108 (T) <1 (-) 76 (-) >0.05
rs75630094 chr7:23290784 GPNMB C - 3 T vs. C - 0.108 (C) >1 (-) 76 (-) >0.05
rs13243961 chr7:23240263 NUPL2 C - 10 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
rs75574164 chr7:23289136 GPNMB C - 3 A vs. C - 0.108 (C) >1 (-) 76 (-) >0.05
rs73277831 chr7:23289600 GPNMB C - 3 A vs. G - 0.108 (A) <1 (-) 76 (-) >0.05
rs117806616 chr7:23354786 IGF2BP3 C - 4 C vs. G 0.008 (C) - <1 (-) 0 (-) >0.05
rs78208743 chr7:23293145 GPNMB C - 3 T vs. G - - <1 (-) 75 (-) >0.05
rs113539603 chr7:23234310 NUPL2 C - 6 T vs. C 0.017 (C) - >1 (-) 0 (-) >0.05
rs17147967 chr7:23293284 GPNMB C - 3 T vs. C - 0.108 (C) >1 (-) 75 (-) >0.05
rs111319354 chr7:23295498 GPNMB C - 3 T vs. C - 0.108 (T) <1 (-) 75 (-) >0.05
rs145720918 chr7:23358355 IGF2BP3 C - 5 T vs. G - - >1 (-) 0 (-) >0.05
rs5014167 chr7:23242303 NUPL2 [+1673bp] C - 13 C vs. G 0.042 (G) - >1 (-) 0 (-) >0.05
rs140860299 chr7:23342676 MALSU1 C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs145610736 chr7:23237129 NUPL2 C - 4 C vs. G - - >1 (-) 48 (-) >0.05
rs75870848 chr7:23257271 NUPL2 [+16641bp] C - 4 T vs. C - - >1 (-) 67 (-) >0.05
rs140080845 chr7:23255845 NUPL2 [+15215bp] C - 4 A vs. G - - >1 (-) 66 (-) >0.05
rs78719061 chr7:23255603 NUPL2 [+14973bp] C - 4 T vs. C - - <1 (-) 66 (-) >0.05
rs80126117 chr7:23255573 NUPL2 [+14943bp] C - 4 T vs. G - - <1 (-) 66 (-) >0.05
rs148140007 chr7:23336001 MALSU1 [-2357bp] C - 12 A vs. G - - >1 (-) 38 (-) >0.05
rs77652512 chr7:23332549 MALSU1 [-5809bp] C - 3 A vs. G - - >1 (-) 74 (-) >0.05
rs41516150 chr7:23246426 NUPL2 [+5796bp] C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs74724124 chr7:23278598 GPNMB C - 8 A vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs11979442 chr7:23361030 IGF2BP3 C - 4 T vs. C - - <1 (-) 57 (-) >0.05
rs115147760 chr7:23360505 IGF2BP3 C - 4 T vs. G - - <1 (-) 57 (-) >0.05
rs75115455 chr7:23359938 IGF2BP3 C - 4 T vs. C - - <1 (-) 57 (-) >0.05
rs79417995 chr7:23357512 IGF2BP3 C - 4 T vs. C - - >1 (-) 57 (-) >0.05
rs76004438 chr7:23271745 GPNMB [-3841bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs10950941 chr7:23359684 IGF2BP3 C - 4 A vs. C - - <1 (-) 57 (-) >0.05
rs114188828 chr7:23357533 IGF2BP3 C - 4 T vs. C - - <1 (-) 57 (-) >0.05
rs114350605 chr7:23356672 IGF2BP3 C - 4 T vs. C - - >1 (-) 57 (-) >0.05
rs116812605 chr7:23354045 IGF2BP3 C - 4 T vs. G - - >1 (-) 58 (-) >0.05
rs79124778 chr7:23353519 IGF2BP3 C - 4 T vs. C - - >1 (-) 58 (-) >0.05
rs17729322 chr7:23338559 MALSU1 C - 11 T vs. G 0.117 (T) - <1 (-) 0 (-) >0.05
rs117976797 chr7:23285263 GPNMB C - 5 A vs. G 0.008 (A) - <1 (-) 71 (-) >0.05
rs79570193 chr7:23334004 MALSU1 [-4354bp] C - 6 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs114479506 chr7:23248070 NUPL2 [+7440bp] C - 8 A vs. G 0.067 (A) 0.025 (A) >1 (-) 0 (-) >0.05
rs17796758 chr7:23350018 MALSU1 C - 12 A vs. G 0.117 (G) - >1 (-) 0 (-) >0.05
rs61004799 chr7:23253970 NUPL2 [+13340bp] C - 4 A vs. T - - >1 (-) 64 (-) >0.05
rs115699333 chr7:23296867 GPNMB C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs7799396 chr7:23253838 NUPL2 [+13208bp] C - 4 A vs. G - - >1 (-) 64 (-) >0.05
rs112471806 chr7:23253383 NUPL2 [+12753bp] C - 4 A vs. G - - <1 (-) 64 (-) >0.05
rs76350761 chr7:23241737 NUPL2 [+1107bp] C - 5 A vs. G 0.067 (G) - >1 (-) 0 (-) >0.05

Association studies for this region [+]