GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs858283 chr7:23249708 NUPL2 [+9078bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs858288 chr7:23249111 NUPL2 [+8481bp] C - 13 A vs. T - - >1 (-) 0 (-) >0.05
rs858284 chr7:23249700 NUPL2 [+9070bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs858297 chr7:23244961 NUPL2 [+4331bp] C - 13 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs858298 chr7:23244920 NUPL2 [+4290bp] C - 13 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs858294 chr7:23245632 NUPL2 [+5002bp] C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs858291 chr7:23247361 NUPL2 [+6731bp] C - 13 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs858296 chr7:23245548 NUPL2 [+4918bp] C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs858292 chr7:23246733 NUPL2 [+6103bp] C - 13 T vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs858301 chr7:23244323 NUPL2 [+3693bp] C - 13 T vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs858293 chr7:23246324 NUPL2 [+5694bp] C - 13 A vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs1637224 chr7:23228400 NUPL2 C - 13 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs6955117 chr7:23234140 NUPL2 C - 13 T vs. G 0.033 (T) - <1 (-) 0 (-) >0.05
rs858303 chr7:23243498 NUPL2 [+2868bp] C - 13 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs4473921 chr7:23241991 NUPL2 [+1361bp] C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs1637223 chr7:23228669 NUPL2 C - 13 A vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs1637220 chr7:23232851 NUPL2 C - 13 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs1637219 chr7:23233706 NUPL2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1637218 chr7:23233715 NUPL2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs1728319 chr7:23231199 NUPL2 C - 13 T vs. C 0.025 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs858304 chr7:23243153 NUPL2 [+2523bp] C - 13 A vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs1626853 chr7:23235342 NUPL2 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs858233 chr7:23241533 NUPL2 [+903bp] C - 13 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs458637 chr7:23333166 MALSU1 [-5192bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs858234 chr7:23240815 NUPL2 [+185bp] C - 13 T vs. G 0.033 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs10634 chr7:23240596 NUPL2 C - 13 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs1637215 chr7:23236797 NUPL2 C - 13 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs858237 chr7:23239223 NUPL2 C - 13 A vs. T 0.033 (T) 0.017 (T) >1 (-) 0 (-) >0.05
rs1637216 chr7:23236129 NUPL2 C - 13 A vs. C 0.033 (A) 0.017 (A) <1 (-) 0 (-) >0.05
rs1728327 chr7:23235483 NUPL2 C - 13 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs1637214 chr7:23236842 NUPL2 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs858238 chr7:23239133 NUPL2 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs141409864 chr7:23264443 GPNMB [-11143bp] C - 3 C vs. G - - >1 (-) 75 (-) >0.05
rs137961130 chr7:23272171 GPNMB [-3415bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1620775 chr7:23229518 NUPL2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1728312 chr7:23270927 GPNMB [-4659bp] C - 13 T vs. C 0.042 (C) - >1 (-) 0 (-) >0.05
rs76126144 chr7:23268617 GPNMB [-6969bp] C - 13 A vs. C 0.025 (A) - <1 (-) 0 (-) >0.05
rs114014835 chr7:23263995 GPNMB [-11591bp] C - 3 A vs. G - - >1 (-) 75 (-) >0.05
rs75143479 chr7:23258955 GPNMB [-16631bp] C - 13 A vs. G 0.042 (A) - <1 (-) 0 (-) >0.05
rs1728324 chr7:23232697 NUPL2 C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs1728326 chr7:23234981 NUPL2 C - 13 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs17147947 chr7:23287896 GPNMB C - 3 A vs. C - 0.1 (C) <1 (-) 74 (-) >0.05
rs77845724 chr7:23287826 GPNMB C - 3 A vs. G - - >1 (-) 74 (-) >0.05
rs113158620 chr7:23287498 GPNMB C - 3 T vs. C - 0.108 (C) <1 (-) 74 (-) >0.05
rs17147944 chr7:23286614 GPNMB C - 3 A vs. G - 0.108 (G) <1 (-) 74 (-) >0.05
rs75030519 chr7:23286655 GPNMB C - 3 A vs. T - 0.092 (A) >1 (-) 74 (-) >0.05
rs112640935 chr7:23263113 GPNMB [-12473bp] C - 3 A vs. G - - >1 (-) 76 (-) >0.05
rs113072099 chr7:23262660 GPNMB [-12926bp] C - 3 A vs. G - - <1 (-) 76 (-) >0.05
rs113637765 chr7:23262563 GPNMB [-13023bp] C - 3 T vs. G - - <1 (-) 76 (-) >0.05
rs112552380 chr7:23262296 GPNMB [-13290bp] C - 3 T vs. C - - <1 (-) 76 (-) >0.05

Association studies for this region [+]