GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6955568 chr7:23227335 NUPL2 All: C 108,990 15 C vs. G - - 1.12 (1.08-1.15) 14 (0-52) 2.22e-10
rs2268747 chr7:23313462 GPNMB All: C 108,990 15 G vs. A 0.367 (G) 0.258 (G) 0.90 (0.87-0.93) 0 (0-50) 2.34e-10
rs156407 chr7:23315639 GPNMB [+912bp] All: C 108,990 15 A vs. G 0.392 (A) 0.4 (A) 0.90 (0.87-0.93) 0 (0-40) 2.44e-10
rs4282457 chr7:23322416 GPNMB [+7689bp] All: C 108,990 15 A vs. G - 0.342 (G) 1.11 (1.08-1.15) 0 (0-42) 2.51e-10
rs199654 chr7:23344218 MALSU1 All: C 108,990 15 G vs. A 0.317 (G) 0.15 (G) 0.89 (0.86-0.93) 0 (0-49) 8.88e-09
rs149821 chr7:23339460 MALSU1 All: C 108,990 15 T vs. C 0.433 (T) 0.342 (T) 0.92 (0.89-0.95) 0 (0-9) 3.49e-07
rs156421 chr7:23312487 GPNMB C - 13 A vs. G 0.392 (G) 0.342 (G) >1 (-) 0 (-) <1.00e-06
rs466225 chr7:23332403 MALSU1 [-5955bp] C - 13 T vs. G 0.375 (T) 0.233 (T) <1 (-) 0 (-) <1.00e-04
rs7807879 chr7:23260588 GPNMB [-14998bp] C - 11 T vs. G 0.342 (T) 0.267 (T) <1 (-) 11 (-) <1.00e-04
rs10224388 chr7:23316440 GPNMB [+1713bp] C - 13 A vs. G - - <1 (-) 0 (-) <1.00e-04
rs7794684 chr7:23310805 GPNMB C - 13 A vs. G 0.367 (G) 0.283 (G) >1 (-) 6 (-) <1.00e-04
rs5850 chr7:23314547 GPNMB C - 13 T vs. C 0.367 (T) 0.158 (T) <1 (-) 6 (-) <1.00e-04
rs6955115 chr7:23227144 NUPL2 C - 13 A vs. G 0.375 (G) 0.283 (G) >1 (-) 26 (-) <1.00e-04
rs2268745 chr7:23317600 GPNMB [+2873bp] C - 13 A vs. G 0.367 (A) 0.25 (A) <1 (-) 6 (-) <1.00e-04
rs7795105 chr7:23253094 NUPL2 [+12464bp] C - 13 A vs. G - - <1 (-) 23 (-) <1.00e-04
rs2268744 chr7:23332280 MALSU1 [-6078bp] C - 13 T vs. C 0.383 (T) 0.15 (T) <1 (-) 1 (-) <1.00e-04
rs199657 chr7:23337507 MALSU1 [-851bp] C - 13 C vs. G 0.417 (G) 0.25 (G) >1 (-) 0 (-) <1.00e-04
rs199656 chr7:23337615 MALSU1 [-743bp] C - 13 T vs. G 0.417 (G) 0.25 (G) >1 (-) 0 (-) <1.00e-04
rs4428570 chr7:23361805 IGF2BP3 C - 13 T vs. G - - <1 (-) 0 (-) <1.00e-04
rs9639460 chr7:23294516 GPNMB All: C 108,990 15 A vs. G 0.4 (A) 0.158 (A) 1.08 (1.05-1.12) 10 (0-48) 5.57e-06
rs6961109 chr7:23252413 NUPL2 [+11783bp] C - 13 A vs. G 0.375 (A) 0.275 (A) <1 (-) 15 (-) <1.00e-04
rs6956974 chr7:23252318 NUPL2 [+11688bp] C - 13 C vs. G 0.375 (G) 0.275 (G) >1 (-) 15 (-) <1.00e-04
rs150149719 chr7:23264308 GPNMB [-11278bp] All: C 103,470 14 C vs. T - - 1.29 (1.15-1.44) 0 (0-41) 9.10e-06
rs466240 chr7:23338774 MALSU1 C - 13 T vs. C 0.417 (C) 0.283 (C) >1 (-) 0 (-) <1.00e-04
rs117715796 chr7:23264689 GPNMB [-10897bp] All: C 103,470 14 T vs. C 0.025 (T) - 0.78 (0.70-0.88) 0 (0-41) 2.54e-05
rs117398425 chr7:23264688 GPNMB [-10898bp] All: C 103,470 14 A vs. C 0.025 (A) - 0.78 (0.70-0.88) 0 (0-41) 2.56e-05
rs460031 chr7:23335308 MALSU1 [-3050bp] All: C 108,990 15 T vs. G 0.4 (T) 0.225 (T) 1.08 (1.04-1.11) 0 (0-48) 4.70e-05
rs55775122 chr7:23228758 NUPL2 All: C 108,990 15 G vs. A 0.125 (G) - 0.89 (0.84-0.94) 49 (8-72) 5.01e-05
rs199359 chr7:23338514 MALSU1 C - 13 T vs. C 0.425 (C) 0.15 (C) >1 (-) 0 (-) <1.00e-04
rs6461705 chr7:23360749 IGF2BP3 C - 13 T vs. C - - <1 (-) 0 (-) <1.00e-04
rs55633349 chr7:23317121 GPNMB [+2394bp] All: C 108,990 15 G vs. A 0.108 (G) - 0.90 (0.85-0.95) 38 (0-66) 1.49e-04
rs156414 chr7:23357321 IGF2BP3 C - 13 T vs. C 0.408 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs706014 chr7:23275250 GPNMB [-336bp] C - 13 C vs. G 0.417 (C) 0.175 (C) >1 (-) 30 (-) <0.05
rs77253147 chr7:23314062 GPNMB C - 13 C vs. G 0.075 (G) - >1 (-) 42 (-) <0.05
rs116889372 chr7:23340328 MALSU1 C - 13 T vs. C 0.017 (T) - <1 (-) 0 (-) <0.05
rs144422895 chr7:23286131 GPNMB C - 13 T vs. C - - <1 (-) 53 (-) <0.05
rs4719731 chr7:23271086 GPNMB [-4500bp] C - 13 A vs. T 0.208 (A) 0.375 (A) >1 (-) 0 (-) <0.05
rs76036890 chr7:23277372 GPNMB C - 13 A vs. G 0.058 (A) - <1 (-) 54 (-) <0.05
rs74437133 chr7:23334792 MALSU1 [-3566bp] C - 13 A vs. G 0.058 (A) - <1 (-) 43 (-) <0.05
rs117435549 chr7:23253551 NUPL2 [+12921bp] C - 13 T vs. G 0.05 (G) - >1 (-) 55 (-) <0.05
rs117416732 chr7:23345366 MALSU1 C - 6 A vs. T 0.025 (T) - <1 (-) 42 (-) <0.05
rs34323745 chr7:23312068 GPNMB C - 13 A vs. C 0.183 (A) 0.042 (A) >1 (-) 8 (-) <0.05
rs13225706 chr7:23317917 GPNMB [+3190bp] C - 13 A vs. G - - >1 (-) 17 (-) <0.05
rs13240597 chr7:23284961 GPNMB C - 13 T vs. G 0.183 (G) 0.05 (G) <1 (-) 8 (-) <0.05
rs17147930 chr7:23278903 GPNMB C - 10 C vs. G 0.05 (G) - <1 (-) 0 (-) <0.05
rs145260264 chr7:23337776 MALSU1 [-582bp] C - 10 T vs. C - - >1 (-) 34 (-) <0.05
rs113137390 chr7:23331027 MALSU1 [-7331bp] C - 10 T vs. C - - >1 (-) 34 (-) <0.05
rs3087888 chr7:23351080 MALSU1 C - 11 C vs. G 0.058 (G) - <1 (-) 0 (-) <0.05
rs28502783 chr7:23282960 GPNMB C - 10 T vs. G 0.05 (T) - <1 (-) 0 (-) <0.05
rs35487638 chr7:23342798 MALSU1 C - 13 A vs. G 0.183 (G) 0.058 (G) <1 (-) 0 (-) <0.05

Association studies for this region [+]