FAM47E, chr4:77135193-77204933 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6812193 chr4:77198986 FAM47E All: C 120,238 21 T vs. C 0.392 (T) 0.092 (T) 0.91 (0.88-0.93) 36 (0-62) 1.85e-11
Meta_image?name=rs6812193

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11935444 chr4:77212217 FAM47E-STBD1 All: C 108,990 15 T vs. C 0.458 (T) 0.325 (T) 0.94 (0.91-0.97) 12 (0-50) 6.03e-05
rs4859625 chr4:77104529 SCARB2 All: C 108,990 15 C vs. T 0.092 (C) 0.25 (C) 1.15 (1.07-1.23) 9 (0-46) 6.21e-05
rs7675963 chr4:77142050 FAM47E C - 13 C vs. G 0.375 (C) - >1 (-) 0 (-) <1.00e-04
rs59473442 chr4:77140297 FAM47E C - 13 A vs. T 0.375 (A) - >1 (-) 0 (-) <1.00e-04
rs12643198 chr4:77163426 FAM47E All: C 108,990 15 A vs. G 0.075 (A) 0.467 (A) 1.11 (1.06-1.17) 0 (0-50) 6.70e-05
rs55889442 chr4:77136827 FAM47E C - 13 C vs. G 0.375 (C) - >1 (-) 0 (-) <1.00e-04
rs62303000 chr4:77137580 FAM47E C - 13 A vs. T 0.375 (T) - <1 (-) 0 (-) <1.00e-04
rs12506745 chr4:77220837 FAM47E-STBD1 All: C 108,990 15 T vs. G 0.475 (T) 0.183 (G) 0.94 (0.91-0.97) 0 (0-14) 7.33e-05
rs7662031 chr4:77205338 FAM47E-STBD1 All: C 108,990 15 T vs. C 0.25 (T) 0.0 (T) 0.92 (0.89-0.96) 38 (0-67) 7.72e-05
rs7664889 chr4:77087704 SCARB2 All: C 108,990 15 T vs. G 0.092 (T) 0.283 (T) 1.14 (1.07-1.21) 20 (0-56) 7.78e-05
rs62300825 chr4:77205319 FAM47E-STBD1 All: C 108,990 15 A vs. G 0.25 (A) - 0.92 (0.89-0.96) 38 (0-67) 7.88e-05
rs111332382 chr4:77128389 SCARB2 All: C 103,470 14 T vs. C - - 1.43 (1.20-1.70) 0 (0-35) 8.01e-05
rs6810903 chr4:77198363 FAM47E All: C 108,990 15 T vs. C 0.25 (T) 0.042 (T) 0.93 (0.89-0.96) 43 (0-69) 8.41e-05
rs17236661 chr4:77196476 FAM47E All: C 108,990 15 G vs. T 0.25 (G) 0.042 (G) 0.92 (0.89-0.96) 45 (0-70) 8.44e-05
rs28698332 chr4:77197845 FAM47E All: C 108,990 15 G vs. A 0.25 (G) 0.042 (G) 0.92 (0.89-0.96) 42 (0-69) 8.76e-05
rs4859442 chr4:77208107 FAM47E-STBD1 All: C 108,990 15 G vs. A 0.458 (G) 0.333 (G) 0.94 (0.91-0.97) 25 (0-60) 8.80e-05
rs7698049 chr4:77208436 FAM47E-STBD1 All: C 108,990 15 A vs. G - - 1.07 (1.03-1.10) 25 (0-60) 8.80e-05
rs1550556 chr4:77094541 SCARB2 All: C 108,990 15 T vs. C 0.092 (T) 0.283 (T) 1.14 (1.07-1.21) 18 (0-55) 9.10e-05
rs28506049 chr4:77190649 FAM47E All: C 108,990 15 A vs. G - - 1.08 (1.04-1.12) 45 (0-70) 9.34e-05
rs4859639 chr4:77153136 FAM47E All: C 108,990 15 T vs. C 0.108 (T) 0.475 (T) 1.11 (1.05-1.17) 0 (0-44) 9.83e-05
rs28618267 chr4:77191952 FAM47E All: C 108,990 15 A vs. G 0.25 (A) - 0.93 (0.89-0.96) 44 (0-70) 1.11e-04
rs13119254 chr4:77095143 SCARB2 All: C 106,227 14 G vs. A 0.092 (G) 0.233 (G) 1.14 (1.07-1.22) 21 (0-58) 1.28e-04
rs1441923 chr4:77103529 SCARB2 All: C 108,990 15 C vs. T 0.083 (C) 0.25 (C) 1.13 (1.06-1.21) 20 (0-56) 1.65e-04
rs13117238 chr4:77173914 FAM47E All: C 108,990 15 A vs. C 0.133 (A) 0.467 (A) 1.09 (1.04-1.13) 0 (0-48) 1.95e-04
rs3733248 chr4:77231294 FAM47E-STBD1 All: C 108,990 15 A vs. C 0.058 (A) 0.175 (A) 0.92 (0.87-0.96) 0 (0-34) 2.19e-04
rs1348207 chr4:77167499 FAM47E C - 13 A vs. T 0.333 (A) 0.05 (T) >1 (-) 0 (-) <0.05
rs74889910 chr4:77183646 FAM47E All: C 108,990 15 G vs. A 0.075 (G) 0.383 (G) 1.11 (1.05-1.17) 31 (0-63) 3.36e-04
rs114261008 chr4:77251326 CCDC158 C - 8 C vs. G 0.033 (C) - >1 (-) 12 (-) <0.05
rs3733251 chr4:77192838 FAM47E All: C 106,157 14 C vs. A 0.142 (C) 0.05 (C) 0.92 (0.88-0.97) 0 (0-48) 5.34e-04
rs1596115 chr4:77151432 FAM47E C - 13 C vs. G 0.108 (G) 0.475 (G) <1 (-) 0 (-) <0.05
rs13136819 chr4:77151715 FAM47E C - 13 C vs. G 0.108 (G) 0.475 (G) <1 (-) 0 (-) <0.05
rs4859437 chr4:77174095 FAM47E C - 13 A vs. T 0.075 (A) 0.467 (A) >1 (-) 5 (-) <0.05
rs4859431 chr4:77152539 FAM47E C - 13 C vs. G 0.108 (C) 0.483 (C) >1 (-) 0 (-) <0.05
rs71607345 chr4:77156297 FAM47E C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs13111888 chr4:77131294 SCARB2 C - 13 A vs. G 0.158 (A) 0.25 (A) >1 (-) 0 (-) <0.05
rs56896076 chr4:77161632 FAM47E C - 13 C vs. G 0.075 (G) 0.467 (G) <1 (-) 0 (-) <0.05
rs72858533 chr4:77155742 FAM47E C - 13 C vs. G 0.058 (G) 0.017 (G) >1 (-) 0 (-) <0.05
rs73828720 chr4:77155728 FAM47E C - 13 C vs. G 0.067 (G) 0.033 (G) >1 (-) 0 (-) <0.05
rs1596117 chr4:77151490 FAM47E C - 13 T vs. C 0.175 (T) 0.483 (T) >1 (-) 2 (-) <0.05
rs66820534 chr4:77193649 FAM47E C - 13 A vs. T 0.142 (A) 0.05 (A) <1 (-) 16 (-) <0.05
rs10001396 chr4:77250507 CCDC158 C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs59738370 chr4:77210387 FAM47E-STBD1 C - 13 A vs. T 0.458 (A) 0.325 (A) <1 (-) 28 (-) <0.05
rs4859666 chr4:77240206 CCDC158 C - 13 A vs. T - - >1 (-) 0 (-) <0.05
rs60876302 chr4:77191260 FAM47E C - 13 A vs. T 0.408 (T) 0.458 (T) <1 (-) 34 (-) <0.05
rs12512579 chr4:77111032 SCARB2 C - 13 T vs. C 0.25 (T) 0.358 (T) <1 (-) 47 (-) <0.05
rs67373731 chr4:77201080 FAM47E C - 13 A vs. T 0.142 (A) 0.05 (A) <1 (-) 23 (-) <0.05
rs13123108 chr4:77197882 FAM47E C - 13 C vs. G 0.408 (C) 0.467 (C) >1 (-) 34 (-) <0.05
rs2869854 chr4:77099673 SCARB2 C - 13 T vs. C 0.092 (T) 0.242 (T) >1 (-) 30 (-) <0.05
rs12641190 chr4:77098938 SCARB2 C - 12 T vs. C 0.092 (C) 0.242 (C) <1 (-) 31 (-) <0.05
rs1470193 chr4:77101237 SCARB2 C - 13 T vs. C 0.1 (C) 0.242 (C) <1 (-) 29 (-) <0.05

Association studies for this region [+]