LAMP3, chr3:182840001-182881627 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11711441 chr3:182821275 MCCC1 All: C 108,990 15 A vs. G 0.2 (A) 0.25 (A) 0.83 (0.79-0.87) 0 (0-53) 2.54e-14
Meta_image?name=rs11711441

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs13095191 chr3:182881883 LAMP3 [+256bp] C - 12 A vs. G - - <1 (-) 16 (-) >0.05
rs71314288 chr3:182882267 LAMP3 [+640bp] C - 12 A vs. G 0.108 (G) 0.117 (G) >1 (-) 17 (-) >0.05
rs13095330 chr3:182881951 LAMP3 [+324bp] C - 12 A vs. G - - <1 (-) 25 (-) >0.05
rs35816308 chr3:182885085 LAMP3 [+3458bp] C - 12 C vs. G - - >1 (-) 17 (-) >0.05
rs35917586 chr3:182884661 LAMP3 [+3034bp] C - 12 T vs. C 0.1 (T) 0.092 (T) <1 (-) 12 (-) >0.05
rs12493050 chr3:182865073 LAMP3 C - 12 A vs. G 0.217 (G) 0.3 (G) >1 (-) 34 (-) >0.05
rs6800506 chr3:182827465 MCCC1 C - 13 C vs. G - - <1 (-) 44 (-) >0.05
rs79447920 chr3:182852214 LAMP3 C - 8 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs35437557 chr3:182884941 LAMP3 [+3314bp] C - 12 A vs. G 0.1 (A) 0.092 (A) <1 (-) 14 (-) >0.05
rs13098857 chr3:182831612 MCCC1 C - 13 T vs. C 0.208 (T) 0.275 (T) >1 (-) 45 (-) >0.05
rs34957377 chr3:182883018 LAMP3 [+1391bp] C - 12 A vs. G - - <1 (-) 18 (-) >0.05
rs1566707 chr3:182830214 MCCC1 C - 13 A vs. G 0.15 (A) 0.225 (A) >1 (-) 47 (-) >0.05
rs13088240 chr3:182884731 LAMP3 [+3104bp] C - 12 T vs. C 0.1 (C) 0.092 (C) >1 (-) 17 (-) >0.05
rs35532510 chr3:182884632 LAMP3 [+3005bp] C - 12 T vs. G 0.1 (T) 0.092 (T) <1 (-) 16 (-) >0.05
rs13075223 chr3:182882218 LAMP3 [+591bp] C - 12 T vs. C 0.075 (C) 0.108 (C) >1 (-) 16 (-) >0.05
rs34053704 chr3:182885170 LAMP3 [+3543bp] C - 12 A vs. G - - >1 (-) 22 (-) >0.05
rs112020974 chr3:182923057 MCF2L2 C - 11 T vs. C - - <1 (-) 8 (-) >0.05
rs501044 chr3:182877982 LAMP3 C - 12 T vs. C 0.192 (C) 0.492 (T) >1 (-) 0 (-) >0.05
rs77066450 chr3:182921101 MCF2L2 C - 11 A vs. G 0.092 (A) 0.108 (A) <1 (-) 7 (-) >0.05
rs34225607 chr3:182881852 LAMP3 [+225bp] C - 12 T vs. C 0.108 (T) 0.108 (T) <1 (-) 16 (-) >0.05
rs937652 chr3:182817328 MCCC1 C - 13 C vs. G 0.2 (C) 0.233 (C) >1 (-) 42 (-) >0.05
rs500910 chr3:182878032 LAMP3 C - 13 A vs. T 0.292 (T) 0.45 (A) >1 (-) 6 (-) >0.05
rs115192480 chr3:182866337 LAMP3 C - 11 T vs. C 0.025 (C) - >1 (-) 18 (-) >0.05
rs11714270 chr3:182819912 MCCC1 C - 13 T vs. C 0.158 (T) 0.183 (T) >1 (-) 42 (-) >0.05
rs139002036 chr3:182809553 MCCC1 C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs147956951 chr3:182930621 MCF2L2 C - 3 T vs. C - - <1 (-) 57 (-) >0.05
rs61325936 chr3:182888240 LAMP3 [+6613bp] C - 12 A vs. G - - <1 (-) 40 (-) >0.05
rs116775721 chr3:182814549 MCCC1 C - 7 T vs. C 0.008 (T) - >1 (-) 40 (-) >0.05
rs74544922 chr3:182923265 MCF2L2 C - 3 T vs. C 0.075 (C) - <1 (-) 0 (-) >0.05
rs580116 chr3:182872446 LAMP3 C - 13 T vs. C 0.2 (T) 0.283 (T) <1 (-) 40 (-) >0.05
rs1464574 chr3:182878838 LAMP3 C - 13 T vs. C 0.425 (T) 0.4 (C) <1 (-) 10 (-) >0.05
rs1965484 chr3:182878897 LAMP3 C - 13 T vs. G 0.425 (T) 0.375 (G) <1 (-) 11 (-) >0.05
rs624247 chr3:182873874 LAMP3 C - 13 A vs. G 0.358 (G) 0.358 (G) >1 (-) 33 (-) >0.05
rs116291701 chr3:182811810 MCCC1 C - 10 C vs. G 0.033 (G) - <1 (-) 19 (-) >0.05
rs638857 chr3:182872860 LAMP3 C - 13 T vs. G - - >1 (-) 33 (-) >0.05
rs78253859 chr3:182849441 LAMP3 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs537814 chr3:182862682 LAMP3 C - 13 A vs. G 0.317 (G) 0.333 (G) >1 (-) 24 (-) >0.05
rs73886244 chr3:182860258 LAMP3 C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs11713488 chr3:182883002 LAMP3 [+1375bp] C - 13 C vs. G 0.417 (G) 0.35 (C) >1 (-) 18 (-) >0.05
rs6786641 chr3:182870673 LAMP3 C - 13 A vs. C 0.358 (A) 0.325 (A) <1 (-) 27 (-) >0.05
rs653316 chr3:182871962 LAMP3 C - 13 T vs. C 0.2 (C) 0.283 (C) >1 (-) 41 (-) >0.05
rs73056043 chr3:182856647 LAMP3 C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs7427317 chr3:182867144 LAMP3 C - 13 A vs. G - - >1 (-) 26 (-) >0.05
rs4543037 chr3:182864497 LAMP3 C - 13 A vs. G - - >1 (-) 15 (-) >0.05
rs4527412 chr3:182864488 LAMP3 C - 13 A vs. G - - >1 (-) 15 (-) >0.05
rs506385 chr3:182877435 LAMP3 C - 13 T vs. G 0.367 (T) 0.367 (G) <1 (-) 40 (-) >0.05
rs605105 chr3:182867869 LAMP3 C - 13 A vs. G 0.208 (G) 0.3 (G) >1 (-) 37 (-) >0.05
rs115443587 chr3:182898165 MCF2L2 C - 11 A vs. C 0.017 (A) - <1 (-) 19 (-) >0.05
rs148131560 chr3:182877092 LAMP3 C - 5 C vs. G - - >1 (-) 35 (-) >0.05
rs472795 chr3:182905808 MCF2L2 C - 13 A vs. G 0.1 (A) 0.008 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]